rhshah / iAnnotateSVLinks
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
☆16Updated 2 weeks ago
Alternatives and similar repositories for iAnnotateSV
Users that are interested in iAnnotateSV are comparing it to the libraries listed below
Sorting:
- ☆11Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 4 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆15Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- ☆18Updated 4 years ago
- ☆21Updated 3 weeks ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 5 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- Mutation rate analysis of autosomal loci☆14Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Filter and prioritize fusion calls☆20Updated 11 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year