ShenLab-Genomics / MAGPIELinks
☆17Updated last year
Alternatives and similar repositories for MAGPIE
Users that are interested in MAGPIE are comparing it to the libraries listed below
Sorting:
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- ☆23Updated 6 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated last week
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- ☆18Updated 3 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Updated 3 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆23Updated 3 weeks ago
- ☆14Updated 8 months ago
- CNV detection tool for WES data☆12Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- ☆11Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated last month
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated last year
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- ☆11Updated 2 years ago