ShenLab-Genomics / MAGPIELinks
☆17Updated last year
Alternatives and similar repositories for MAGPIE
Users that are interested in MAGPIE are comparing it to the libraries listed below
Sorting:
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- ☆18Updated 3 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- CADD-SV – a framework to score the effect of structural variants☆18Updated this week
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆14Updated 2 years ago
- ☆12Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 6 years ago
- Filters for Next Generation Sequencing☆12Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 8 months ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Updated last year
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA