ShenLab-Genomics / MAGPIE
☆14Updated 6 months ago
Alternatives and similar repositories for MAGPIE:
Users that are interested in MAGPIE are comparing it to the libraries listed below
- ☆18Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆20Updated 6 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 2 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆11Updated last year
- ☆10Updated last year
- Workflow for Sequenza, cellularity and ploidy☆18Updated last month
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆11Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆16Updated last year
- ☆13Updated 10 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- ☆14Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 2 months ago
- ☆22Updated 3 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 months ago
- ☆21Updated last month
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 11 months ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year