☆17Oct 17, 2024Updated last year
Alternatives and similar repositories for MAGPIE
Users that are interested in MAGPIE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jun 19, 2026Updated 2 months ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- ☆21Aug 30, 2022Updated 4 years ago
- ☆19Mar 14, 2022Updated 4 years ago
- ☆12Oct 19, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Clinical machine-learning based interpreter of germline mutations.☆11Mar 13, 2025Updated last year
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- Research pipeline for exploring clinically relevant genomic variants☆17Jul 20, 2026Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆41May 19, 2026Updated 3 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- ☆13Jul 18, 2025Updated last year
- ☆13Dec 7, 2021Updated 4 years ago
- ☆52Sep 4, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 6 months ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆27Dec 15, 2025Updated 8 months ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆16Oct 17, 2021Updated 4 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆46Mar 4, 2024Updated 2 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆36Jun 17, 2024Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆27Aug 20, 2026Updated last week
- Curated list of resources for variant prioritization☆15Nov 18, 2025Updated 9 months ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Aug 4, 2026Updated 3 weeks ago
- CNV detection tool for WES data☆13Aug 21, 2024Updated 2 years ago
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 10 months ago
- Basic UPD caller☆12Aug 23, 2021Updated 5 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 2 months ago
- ☆21Jul 28, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a Shiny/R application to view and annotate copy number variations☆28Mar 8, 2023Updated 3 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17May 16, 2025Updated last year
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Clinical interpretation of somatic mutations in cancer☆53Feb 20, 2025Updated last year
- ☆14Jun 11, 2020Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆93Oct 30, 2025Updated 10 months ago