identifying mutational significance in cancer genomes
☆61Nov 16, 2022Updated 3 years ago
Alternatives and similar repositories for MuSiC2
Users that are interested in MuSiC2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆421May 25, 2026Updated 4 months ago
- Computes various SV statistics☆13Oct 12, 2023Updated 2 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated 2 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆20Sep 30, 2018Updated 8 years ago
- ☆44Nov 18, 2019Updated 6 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Feb 10, 2022Updated 4 years ago
- Identifying recurrent mutations in cancer☆40Mar 4, 2021Updated 5 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆503Feb 25, 2026Updated 7 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Sep 15, 2026Updated 3 weeks ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Jan 28, 2026Updated 8 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- ☆22Feb 5, 2025Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆62Jun 7, 2019Updated 7 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆166Mar 28, 2023Updated 3 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆113Oct 12, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- ASCAT R package☆205Feb 12, 2026Updated 7 months ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 8 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 7 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆25Oct 6, 2020Updated 6 years ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- a tool for processing .bed and .vcf files☆21Apr 25, 2017Updated 9 years ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆126Aug 19, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 10 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Oct 1, 2020Updated 6 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆79Jul 14, 2022Updated 4 years ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆203Sep 20, 2024Updated 2 years ago