ding-lab / MuSiC2Links
identifying mutational significance in cancer genomes
☆61Updated 2 years ago
Alternatives and similar repositories for MuSiC2
Users that are interested in MuSiC2 are comparing it to the libraries listed below
Sorting:
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- ☆41Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 3 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆72Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆46Updated 5 years ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- ☆69Updated last year
- ☆53Updated 2 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated 11 months ago
- CNV screening and annotation tool☆25Updated 8 years ago
- ☆57Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated 8 months ago
- ☆68Updated 3 years ago