zanglab / SICER2Links
☆22Updated 4 months ago
Alternatives and similar repositories for SICER2
Users that are interested in SICER2 are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- ☆28Updated 6 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated 8 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- RiboPlotR package for Ribo-plot☆15Updated last week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- ☆19Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago