zanglab / SICER2
☆20Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for SICER2
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 4 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- ☆9Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- ☆18Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- DriverPower☆26Updated 5 months ago
- ☆12Updated 8 years ago
- ☆23Updated 2 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 9 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- R package wrapping bedtools☆37Updated 2 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated last month
- ☆17Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- Statistically Significant loops from HiChIP data☆39Updated 7 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆11Updated 4 years ago