NYU-BFX / hic-bench

Related projects: ⓘ

• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆51Updated 3 years ago
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆34Updated 9 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆31Updated 2 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆40Updated 6 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆43Updated last year
• GuttmanLab / sprite-pipeline
  A self-contained repository of all code needed for SPRITE analysis
  ☆20Updated 3 years ago
• Henikoff / Cut-and-Run
  ☆29Updated 6 years ago
• dozmorovlab / TADCompare
  Package for analysis and characterization of differential TADs
  ☆22Updated 2 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆64Updated 5 years ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆43Updated 5 years ago
• XiaoTaoWang / NeoLoopFinder
  A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
  ☆56Updated 10 months ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 3 years ago
• ParkerLab / ataqv
  A toolkit for QC and visualization of ATAC-seq results.
  ☆64Updated last year
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆52Updated last year
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆98Updated 2 years ago
• ren-lab / hic-pipeline
  ☆24Updated 3 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆57Updated 3 years ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆31Updated last year
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆34Updated 2 years ago
• lh3 / hickit
  TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
  ☆106Updated 3 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆49Updated last year
• parklab / ShatterSeek
  ☆65Updated last year
• gersteinlab / starrpeaker
  STARRPeaker: STARR-seq peak caller
  ☆14Updated 2 years ago
• nloyfer / UXM_deconv
  ☆35Updated last year
• Bioconductor / copy-number-analysis
  Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
  ☆21Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆34Updated 3 years ago
• sklasfeld / DANPOS3
  Updated DANPOS2 to work with python3
  ☆20Updated 6 months ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆23Updated 3 weeks ago
• dphansti / mango
  chia pet analysis software
  ☆24Updated 5 years ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆17Updated 4 years ago