NYU-BFX / hic-benchLinks
A set of pipelines for Hi-C and ChIP-Seq analysis.
☆46Updated last year
Alternatives and similar repositories for hic-bench
Users that are interested in hic-bench are comparing it to the libraries listed below
Sorting:
- Tutorial Website☆59Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- A self-contained repository of all code needed for SPRITE analysis☆21Updated 3 years ago
- ☆30Updated 6 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- release version☆54Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆39Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- ☆24Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated last week
- ☆43Updated 2 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆60Updated 10 months ago