Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nucleoid- associated proteins and the condensin MukBEF)
☆11Aug 19, 2020Updated 5 years ago
Alternatives and similar repositories for E_coli_analysis
Users that are interested in E_coli_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- A template to create CVs/Resumes with Quarto☆13Jul 17, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Jul 7, 2026Updated 3 weeks ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- Simple Jupyter chat UI for LangChain☆10Jul 3, 2024Updated 2 years ago
- ☆12Apr 25, 2026Updated 3 months ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated 2 years ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 10 years ago
- Pair correlation function analysis of fluorescence fluctuations in big image time series.☆10Feb 25, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆27Updated this week
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago
- Biocore bootcamp☆17Sep 29, 2025Updated 9 months ago
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆42May 18, 2026Updated 2 months ago
- Micro-C QC and data analysis☆17Aug 1, 2023Updated 2 years ago
- Scripts to perform active learning as described in the referenced article.☆13Sep 17, 2025Updated 10 months ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- Introductory workshop teaching python for Data Science and Biomedical Machine Learning☆12May 13, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 4 years ago
- Chrome extension to automatically complete levels for you, and to give you unlimitied lives, while playing Candy Crush☆23May 22, 2017Updated 9 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated 2 years ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 6 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- ExTrack MLE for diffusive noisy single-particle tracks☆16Jun 24, 2026Updated last month
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 7 years ago
- ☆14May 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆17Dec 16, 2024Updated last year
- Docker for 4DN Hi-C processing pipeline☆62Nov 26, 2024Updated last year
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Updated this week
- Website to analyze conflicting assertions in ClinVar☆20Mar 16, 2026Updated 4 months ago
- ☆10Nov 30, 2024Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- Pytorch implementation of Count-ception and custom CNN counting models for Kaggle Sea Lion Count challenge☆11Jun 30, 2017Updated 9 years ago