PouletAxel / SIPLinks
SIP: Significant Interaction Peak caller
☆15Updated 5 months ago
Alternatives and similar repositories for SIP
Users that are interested in SIP are comparing it to the libraries listed below
Sorting:
- Architectural stripe detection from 3D genome conformation data☆18Updated 3 weeks ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 3 weeks ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- ☆17Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆33Updated 6 months ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆42Updated 10 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 6 months ago
- Red-C data processing☆15Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago