anlin00007 / OnTADLinks
An Optimized Nested TAD caller for Hi-C data
☆22Updated 3 years ago
Alternatives and similar repositories for OnTAD
Users that are interested in OnTAD are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆37Updated 5 years ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆22Updated last month
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆11Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Genome-wide contact analysis using sklearn☆65Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆24Updated 4 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- chia pet analysis software☆25Updated 6 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated 2 months ago
- ☆22Updated last year
- ☆21Updated 4 years ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year