anlin00007 / OnTAD
An Optimized Nested TAD caller for Hi-C data
☆20Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for OnTAD
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- ☆35Updated 5 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- 4C-seq processing pipeline☆22Updated 7 months ago
- Statistically Significant loops from HiChIP data☆39Updated 7 months ago
- ☆16Updated 4 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- ☆20Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- ☆19Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆18Updated 10 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆43Updated 2 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- IDR☆30Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- ☆23Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- Cooler demo using a Jupyter notebook Binder☆15Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆32Updated 3 years ago
- ☆33Updated last year
- QC report generator for Hi-C pairs file☆10Updated 4 years ago