Roy-lab / HiC-RegLinks
HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals
☆11Updated 4 years ago
Alternatives and similar repositories for HiC-Reg
Users that are interested in HiC-Reg are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated last week
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆13Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- ☆49Updated 10 months ago
- polyApipe☆17Updated 4 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆9Updated 3 years ago
- ☆17Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- ☆19Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago
- Fast motif matching in R☆47Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 5 months ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- ☆18Updated 4 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 2 months ago
- Perturb-seq analysis package☆14Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago