deeptools / py2bitLinks
A python library for accessing 2bit files
☆19Updated 6 months ago
Alternatives and similar repositories for py2bit
Users that are interested in py2bit are comparing it to the libraries listed below
Sorting:
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- ☆39Updated last month
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Core functionality of the CGAT code☆33Updated this week
- Library for indexing VCF files for random access searches by rsID☆17Updated 2 weeks ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated 10 months ago
- Python module to read binary Plink files.☆17Updated last year
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Downloader for ENCODE☆32Updated 4 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Efficient handling of FASTQ files from Python☆51Updated this week
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- Container class to represent genomic locations and support genomic analysis☆22Updated last week
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago