deeptools / py2bitLinks
A python library for accessing 2bit files
☆21Updated 9 months ago
Alternatives and similar repositories for py2bit
Users that are interested in py2bit are comparing it to the libraries listed below
Sorting:
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- ☆39Updated 4 months ago
- Python module to read binary Plink files.☆17Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- Python wrapper for MaxEntScan to calculate splice site strength.☆17Updated 3 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Library for indexing VCF files for random access searches by rsID☆17Updated 3 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 2 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Updated 5 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Updated 2 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year