A python library for accessing 2bit files
☆21Apr 21, 2026Updated 4 months ago
Alternatives and similar repositories for py2bit
Users that are interested in py2bit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Aug 16, 2026Updated last month
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 5 months ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆27Dec 15, 2025Updated 9 months ago
- Python bindings to bwa mem☆32Mar 26, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 6 months ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Apr 12, 2018Updated 8 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆18Jul 15, 2026Updated 2 months ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆11Updated this week
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- ☆16Sep 8, 2024Updated 2 years ago
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆48Jul 20, 2023Updated 3 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 2 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Feb 16, 2021Updated 5 years ago
- An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data☆32May 22, 2018Updated 8 years ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Jul 29, 2026Updated last month
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated last month
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆17May 14, 2023Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 9 years ago
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- ☆17Aug 8, 2025Updated last year
- Fragmentase Artifact Detection and Elimination☆13Mar 22, 2022Updated 4 years ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 4 years ago
- an API for intersections of genomic data☆149Updated this week
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a lexicographically-based GTF/GFF sorter☆39Aug 8, 2026Updated last month
- Assemblies from HPP Year 1 production☆83May 9, 2023Updated 3 years ago
- ☆15Apr 17, 2026Updated 5 months ago
- Optimized sequence graph implementations for graph genomics☆36Jun 30, 2026Updated 2 months ago
- ☆52Mar 22, 2026Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆47Jul 24, 2025Updated last year
- R package for extracting mutation signatures from a list of somatic mutations☆38Aug 9, 2019Updated 7 years ago