GMOD / indexedfasta-js
Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
☆12Updated this week
Alternatives and similar repositories for indexedfasta-js:
Users that are interested in indexedfasta-js are comparing it to the libraries listed below
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Updated this week
- Python NGS Repository☆9Updated 5 months ago
- HiGlass track for displaying arcs between disconnected regions☆9Updated 2 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Updated last year
- a minimal, scriptable genome browser for python☆48Updated 3 weeks ago
- ☆10Updated this week
- structure detection program☆17Updated last month
- High performance WebGL genome visualization☆14Updated 3 years ago
- ☆26Updated 2 years ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- python implementation of the PAGE algorithm☆15Updated 8 months ago
- Fast sequencing data quality metrics☆17Updated 2 weeks ago
- Builds a PEP from SRA or GEO accessions☆46Updated 4 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆26Updated last week
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆54Updated this week
- bedtools-like functionality for interval sets in rust☆49Updated 4 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 4 months ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆43Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- A python package for showing JBrowse views☆23Updated last year
- simple library for dealing with SAM cigar strings☆40Updated 3 years ago
- Processing and plotting tools for genomics data☆20Updated 2 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Parse BAM and BAM index files in javascript for node and the browser☆22Updated this week
- Teaching modules for Human Genome Variation Lab.☆19Updated 5 months ago