☆52Mar 22, 2026Updated 4 months ago
Alternatives and similar repositories for DART-Eval
Users that are interested in DART-Eval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆25Jun 26, 2024Updated 2 years ago
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Jun 29, 2026Updated 3 weeks ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- ☆25Aug 20, 2024Updated last year
- ☆27Apr 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RNA-seq prediction with deep convolutional neural networks.☆256Aug 28, 2025Updated 10 months ago
- ☆23Updated this week
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 7 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆59Jul 19, 2026Updated last week
- Biological sequence analysis for the modern age.☆305Jul 19, 2026Updated last week
- ☆34Jan 27, 2025Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated 11 months ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The official repository for the ARSENAL model☆16Jul 3, 2026Updated 3 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated last month
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆240Jun 9, 2026Updated last month
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- TF MOtif Discovery from Importance SCOres☆188May 13, 2026Updated 2 months ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆22Updated this week
- ☆26Jun 5, 2025Updated last year
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Mar 13, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- Genomic Pre-trained Network☆349Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆132Oct 31, 2024Updated last year
- AlphaGenome PyTorch port☆151Updated this week
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆58Jul 17, 2026Updated last week
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 10 months ago
- code to run sei and obtain sei and sequence class predictions☆115Dec 20, 2022Updated 3 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆44May 7, 2026Updated 2 months ago
- Benchmarks for classification of genomic sequences☆179Aug 14, 2025Updated 11 months ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 5 months ago
- Foundation Models for Genomics & Transcriptomics☆901Feb 24, 2026Updated 5 months ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆23Apr 2, 2025Updated last year
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆22Jul 12, 2026Updated 2 weeks ago
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated last month