kundajelab / DART-Eval
☆26Updated last month
Alternatives and similar repositories for DART-Eval:
Users that are interested in DART-Eval are comparing it to the libraries listed below
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆35Updated 3 weeks ago
- Computational Optimization of DNA Activity (CODA)☆55Updated last month
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆35Updated 2 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆17Updated 7 months ago
- Dataloader for applying sequence models to personalized genomics☆22Updated this week
- ☆26Updated 2 weeks ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆67Updated this week
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated 2 weeks ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆34Updated 3 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆36Updated 4 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆28Updated last month
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆34Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆19Updated last year
- ☆17Updated 10 months ago
- ☆71Updated last year
- ☆17Updated 3 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆17Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆121Updated 2 months ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆17Updated 7 months ago
- HLA-II ligand predictor.☆39Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆56Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆49Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆36Updated this week
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆65Updated 2 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- ☆37Updated last year
- Knowledge-primed neural networks☆35Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆25Updated 9 months ago