kundajelab / DART-EvalLinks
☆34Updated last month
Alternatives and similar repositories for DART-Eval
Users that are interested in DART-Eval are comparing it to the libraries listed below
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆59Updated this week
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago
- ☆29Updated 4 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆19Updated 11 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆37Updated last month
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆21Updated 11 months ago
- ☆74Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆32Updated 2 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Updated 2 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆42Updated 8 months ago
- Dataloader for applying sequence models to personalized genomics☆26Updated last week
- Evaluating genomic sequence models for explaining personalized expression variation☆20Updated last year
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated last year
- For fine-tuning Enformer using paired WGS & gene expression data☆17Updated last month
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆44Updated this week
- surrogate quantitative interpretability for deepnets☆22Updated last week
- ☆18Updated last year
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆61Updated 2 weeks ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆80Updated 2 weeks ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆25Updated 3 weeks ago
- ☆17Updated 8 months ago
- ☆21Updated 4 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆48Updated 5 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 4 years ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 3 months ago