Dataloader for applying sequence models to personalized genomics
☆30Jul 19, 2026Updated this week
Alternatives and similar repositories for GenVarLoader
Users that are interested in GenVarLoader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated last month
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆20Sep 16, 2021Updated 4 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆21Aug 28, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- Machine learning methods for DNA sequence analysis.☆64Jun 10, 2026Updated last month
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- ☆34Jan 27, 2025Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆21Jun 8, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆334Jun 12, 2026Updated last month
- ☆25Aug 20, 2024Updated last year
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- surrogate quantitative interpretability for deepnets☆25Aug 11, 2025Updated 11 months ago
- Effortless Pixi Project Management Integration in VSCode☆33Apr 26, 2026Updated 2 months ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 6 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆101Mar 25, 2026Updated 3 months ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆22Jul 3, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- Biological sequence analysis for the modern age.☆304Updated this week
- Claude AI client for Pebble smartwatch☆17Jan 6, 2026Updated 6 months ago
- ☆27Oct 8, 2025Updated 9 months ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- ☆51Mar 22, 2026Updated 3 months ago
- Pyranges: a Python framework for ultrafast sequence interval operations☆58Jul 13, 2026Updated last week
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- A python library for accessing 2bit files☆21Apr 21, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A new module for Megatron-LM training to enhance motif memory in Genomic☆18Feb 2, 2026Updated 5 months ago
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆18Dec 19, 2025Updated 7 months ago
- Container class to represent genomic locations and support genomic analysis☆27Jul 13, 2026Updated last week
- ☆15Dec 11, 2022Updated 3 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆107Jun 23, 2026Updated 3 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated last month
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 3 months ago