daquang / YAMDALinks
Yet Another Motif Discovery Algorithm
☆53Updated 6 years ago
Alternatives and similar repositories for YAMDA
Users that are interested in YAMDA are comparing it to the libraries listed below
Sorting:
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 8 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 3 years ago
- ☆29Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- ☆21Updated 8 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- Genetics training camp☆21Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆48Updated 2 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago