daquang / YAMDALinks
Yet Another Motif Discovery Algorithm
☆53Updated 7 years ago
Alternatives and similar repositories for YAMDA
Users that are interested in YAMDA are comparing it to the libraries listed below
Sorting:
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 3 years ago
- We have moved to https://github.com/limix/limix.☆23Updated 8 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 9 months ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Updated 6 years ago
- Data and analysis for the Splatter paper☆29Updated 8 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆60Updated 3 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 9 years ago
- ☆29Updated 2 years ago
- An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data☆32Updated 7 years ago
- Genetics training camp☆21Updated 5 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Downloader for ENCODE☆32Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆37Updated 4 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago