daquang / YAMDALinks
Yet Another Motif Discovery Algorithm
☆53Updated 6 years ago
Alternatives and similar repositories for YAMDA
Users that are interested in YAMDA are comparing it to the libraries listed below
Sorting:
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- ☆29Updated 2 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data☆32Updated 7 years ago
- Fishers Exact Test for Python (Cython)☆65Updated 2 months ago
- Deep learning for identifying cis-regulatory elements and other applications☆33Updated 8 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- ☆23Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- Computational biology utility scripts☆19Updated last month
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- ☆41Updated 6 years ago