Alternatives and similar repositories for RNA-seq-differential-expression

Users that are interested in RNA-seq-differential-expression are comparing it to the libraries listed below

• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆130Updated last year
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆94Updated 2 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆216Updated 3 weeks ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆90Updated 4 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆84Updated 4 months ago
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆114Updated 2 months ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆63Updated last year
• harvardinformatics / ATAC-seq
  ☆138Updated 6 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆128Updated last year
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆182Updated 4 years ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆54Updated 6 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆137Updated 5 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆138Updated 10 months ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆109Updated 2 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆95Updated 2 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆82Updated last year
• tavareshugo / tutorial_DESeq2_contrasts
  ☆62Updated last year
• tallulandrews / scRNASeqPipeline
  ☆118Updated 6 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆170Updated 4 years ago
• hbctraining / Intro-to-DGE
  ☆204Updated 3 months ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆107Updated 2 months ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆73Updated 3 months ago
• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆123Updated 5 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated last year
• crazyhottommy / pyflow-ChIPseq
  a snakemake pipeline to process ChIP-seq files from GEO or in-house
  ☆108Updated 5 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆219Updated 3 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆193Updated 2 years ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆124Updated 2 years ago