hamidghaedi / RNA-seq-differential-expressionLinks
Differential gene expression analysis on RNA-seq data
☆11Updated last year
Alternatives and similar repositories for RNA-seq-differential-expression
Users that are interested in RNA-seq-differential-expression are comparing it to the libraries listed below
Sorting:
- Step-by-step analysis pipeline for RNA-seq data☆135Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆92Updated 4 years ago
- Introduction to bulk RNA-seq☆119Updated 3 months ago
- ☆94Updated 3 months ago
- ☆137Updated 6 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆169Updated 4 years ago
- Analysis pipeline for ATAC-seq data☆68Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆217Updated last month
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆184Updated 4 years ago
- ☆205Updated 4 months ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated last week
- My youtube programming scripts☆54Updated 6 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆234Updated last month
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆98Updated 3 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆164Updated 2 months ago
- Basic workflow for ATAC-seq analysis☆82Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆139Updated 11 months ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- A DIY guide to gene co-expression network analysis☆12Updated 4 months ago
- my notes for scATACseq analysis☆128Updated last year
- ☆62Updated last year
- published papers with a lot of data☆73Updated 4 months ago
- A continually expanding collection of cancer genomics notes and data☆107Updated 2 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆167Updated 9 months ago
- Single cell RNA sequencing analysis course☆220Updated 3 months ago
- ☆72Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆207Updated last month
- A short tutorial on how to use RSEM☆137Updated 5 years ago