Alternatives and similar repositories for pyEntrezId

Users that are interested in pyEntrezId are comparing it to the libraries listed below

• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆98Updated last year
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 7 months ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆95Updated 9 months ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆45Updated 9 years ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆54Updated 5 months ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• Illumina / PrimateAI-3D
  ☆70Updated 8 months ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆39Updated this week
• GreiffLab / immuneSIM
  ☆38Updated last year
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• qmarcou / IGoR
  IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
  ☆52Updated 3 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆60Updated this week
• hart-lab / drugz
  DRUGZ software
  ☆24Updated 4 years ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆128Updated last month
• zwang-bioinformatics / GOGO
  An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
  ☆18Updated 5 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆32Updated 3 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆42Updated last week
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated last year
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated last month
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆65Updated 4 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆69Updated this week
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated 2 years ago