aziele / alfpyLinks
http://www.combio.pl/alfree
☆23Updated 3 years ago
Alternatives and similar repositories for alfpy
Users that are interested in alfpy are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- Convert genbank files to a swath of other formats☆24Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Find Unique genomic Regions☆32Updated last month
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- ☆18Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 8 months ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 11 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Updated 7 years ago
- Python bindings for the TaxonKit library☆41Updated last week
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago