aziele / alfpy
http://www.combio.pl/alfree
☆23Updated 2 years ago
Alternatives and similar repositories for alfpy
Users that are interested in alfpy are comparing it to the libraries listed below
Sorting:
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Find Unique genomic Regions☆29Updated last month
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆19Updated 8 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 6 years ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 9 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- Convert genbank files to a swath of other formats☆18Updated last year
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Python3 module for running MUMmer and reading the output☆32Updated last month
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 7 years ago
- blast, shmlast☆22Updated 4 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆31Updated 3 years ago