BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
☆18May 14, 2023Updated 3 years ago
Alternatives and similar repositories for BiGMeC
Users that are interested in BiGMeC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for antiSMASH/MiBIG data extraction and manipulation☆14May 23, 2024Updated 2 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated 2 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 3 years ago
- ☆47Jun 27, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The standard for open-source GEMs on GitHub☆22Oct 5, 2026Updated 3 weeks ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16May 24, 2023Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 5 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆48Jul 27, 2026Updated 3 months ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 5 years ago
- ☆12Jun 18, 2020Updated 6 years ago
- antiSMASH☆271Updated this week
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 4 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆106Oct 15, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MGnify API toolkit☆18Jan 31, 2025Updated last year
- ☆15Aug 15, 2026Updated 2 months ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19Oct 14, 2026Updated 2 weeks ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Apr 12, 2018Updated 8 years ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 8 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 11 months ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 3 years ago
- CarveMe: genome-scale metabolic model reconstruction☆223Sep 12, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- GEne Cluster prediction with COnditional random fields.☆90Jul 29, 2026Updated 3 months ago
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 8 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆229Oct 20, 2026Updated last week
- Deep learning for Metagenome Assembly Error Detection☆26Nov 30, 2020Updated 5 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Oct 14, 2026Updated 2 weeks ago
- ☆12Apr 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆17Aug 31, 2026Updated last month
- A user-friendly Laboratory Information Management System (LIMS) development and implementation☆12Apr 11, 2022Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School☆67Updated this week
- PHi-C: deciphering Hi-C data into polymer dynamics☆13Aug 12, 2020Updated 6 years ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆29May 2, 2026Updated 5 months ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆29Jul 12, 2022Updated 4 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago