A fast python class for reading 2-bit files (used by UCSC genome browser)
☆14Aug 16, 2026Updated 2 months ago
Alternatives and similar repositories for twobitreader
Users that are interested in twobitreader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- tabix file access with golang using biogo machinery☆10Jul 1, 2025Updated last year
- ☆13Feb 19, 2017Updated 9 years ago
- Convert 23andMe data to VCFs☆10Aug 8, 2016Updated 10 years ago
- Are you being “Comcast-ed”? Test your speed every 5min and see if you're getting what you're paying.☆12Oct 26, 2017Updated 9 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- ☆26Oct 15, 2020Updated 6 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆11Updated this week
- MuSiCa - Mutational Signatures in Cancer☆22Dec 23, 2023Updated 2 years ago
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- ☆10Mar 15, 2024Updated 2 years ago
- Modelling protein conformations with Alphafold3☆17Updated this week
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Material for introductory course on using Blender for 3D printing☆11Jun 22, 2016Updated 10 years ago
- Examples and Tutorials for using EASE with Python - prepared for EclipseCon France 2016☆10May 27, 2021Updated 5 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data☆21Jan 26, 2026Updated 9 months ago
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 9 years ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated 2 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for extracting mutation signatures from a list of somatic mutations☆38Aug 9, 2019Updated 7 years ago
- Python module to read binary Plink files.☆18Mar 25, 2026Updated 7 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 4 months ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 7 years ago
- VCF (variant call format) parser☆26Oct 14, 2026Updated 2 weeks ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- pip-installable SQLite extensions☆15Feb 23, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 3D segmention tool☆13Apr 6, 2023Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Dec 11, 2017Updated 8 years ago
- Serve your genotypes and phenotypes via an API for satoshis☆22Dec 4, 2015Updated 10 years ago
- is a random text generator based on context-free grammars, it uses a EBNF for grammar definitions.☆20May 5, 2025Updated last year
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆88Jan 7, 2026Updated 9 months ago
- Monarch web application and API☆42Feb 10, 2020Updated 6 years ago