benjschiller / twobitreaderLinks
A fast python class for reading 2-bit files (used by UCSC genome browser)
☆14Updated 3 months ago
Alternatives and similar repositories for twobitreader
Users that are interested in twobitreader are comparing it to the libraries listed below
Sorting:
- ☆26Updated 5 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Updated 3 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last week
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16Updated 11 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Stupid Simple Elastic Compute Cloud☆16Updated 2 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29Updated 8 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- Clonal reconstruction from HTS data☆10Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Chromatin segmentation in R☆19Updated 8 years ago