A fast python class for reading 2-bit files (used by UCSC genome browser)
☆14Aug 16, 2026Updated last month
Alternatives and similar repositories for twobitreader
Users that are interested in twobitreader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python library for accessing 2bit files☆21Apr 21, 2026Updated 4 months ago
- tabix file access with golang using biogo machinery☆10Jul 1, 2025Updated last year
- Convert 23andMe data to VCFs☆10Aug 8, 2016Updated 10 years ago
- ☆13Feb 19, 2017Updated 9 years ago
- Are you being “Comcast-ed”? Test your speed every 5min and see if you're getting what you're paying.☆12Oct 26, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 10 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆11Updated this week
- MuSiCa - Mutational Signatures in Cancer☆22Dec 23, 2023Updated 2 years ago
- Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data☆20Jan 26, 2026Updated 7 months ago
- ☆26Oct 15, 2020Updated 5 years ago
- Modelling protein conformations with Alphafold3☆17Updated this week
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- ☆10Mar 15, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- Material for introductory course on using Blender for 3D printing☆11Jun 22, 2016Updated 10 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 9 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆38Aug 9, 2019Updated 7 years ago
- VCF (variant call format) parser☆26Updated this week
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- Python module to read binary Plink files.☆18Mar 25, 2026Updated 5 months ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A Python implementation of the MARCO/MARCOs algorithm for enumerating MUSes and MSS/MCSes of infeasible constraint systems.☆28Jul 31, 2026Updated last month
- fast easy interval overlapping for nim-lang☆30Jul 9, 2025Updated last year
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆88Jan 7, 2026Updated 8 months ago
- ☆13Jul 15, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆83Aug 10, 2017Updated 9 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- Use Thor's Axe to cut exons into their evolutionary building blocks☆12Jun 29, 2026Updated 2 months ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆37Feb 23, 2023Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated last year