nanoporetech / bwapyLinks
Python bindings to bwa mem
☆32Updated 5 years ago
Alternatives and similar repositories for bwapy
Users that are interested in bwapy are comparing it to the libraries listed below
Sorting:
- Python bindings to spoa☆21Updated last month
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆69Updated 11 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 3 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- ☆49Updated 11 months ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- A C library for handling bigWig files☆81Updated 8 months ago
- ☆31Updated last year
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆92Updated 4 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated last year
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- UCSC Nanopore☆43Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 3 weeks ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Updated 7 years ago