nanoporetech / bwapyLinks
Python bindings to bwa mem
☆32Updated 5 years ago
Alternatives and similar repositories for bwapy
Users that are interested in bwapy are comparing it to the libraries listed below
Sorting:
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆70Updated last week
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- ☆49Updated last year
- Python bindings to spoa☆21Updated 3 months ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 3 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- A C library for handling bigWig files☆81Updated 10 months ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- ☆31Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆93Updated last week
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 11 months ago
- Efficiently read and write sequencing data from Python☆68Updated last month
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Fast5 API provided by ONT Research☆22Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆114Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆95Updated 6 months ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago