nanoporetech / bwapyLinks
Python bindings to bwa mem
☆32Updated 5 years ago
Alternatives and similar repositories for bwapy
Users that are interested in bwapy are comparing it to the libraries listed below
Sorting:
- ☆31Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆48Updated 6 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆47Updated 4 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- Python bindings to spoa☆20Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 7 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- vembrane filters VCF records using python expressions☆58Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 7 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 6 months ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- new repo☆28Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- GEM-Mapper v3☆58Updated 2 months ago
- ☆34Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago