Python bindings to bwa mem
☆33Mar 26, 2020Updated 6 years ago
Alternatives and similar repositories for bwapy
Users that are interested in bwapy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated 2 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆17Jul 20, 2021Updated 5 years ago
- Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals☆20Jan 14, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A python library for accessing 2bit files☆21Apr 21, 2026Updated 6 months ago
- Just Another JAva Package for Sequence Analysis☆27Dec 2, 2022Updated 3 years ago
- Fast, efficient, lossless compression of fastq files☆14Jan 4, 2021Updated 5 years ago
- Python bindings for the parasail C library.☆118Sep 4, 2024Updated 2 years ago
- ixgbe driver for Redox based on ixy.rs☆11Jul 30, 2019Updated 7 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 9 years ago
- ☆12Dec 26, 2018Updated 7 years ago
- Open compressed files in Python☆82Updated this week
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Shiny ClinVar web server source code☆13Apr 29, 2019Updated 7 years ago
- Analytics toolkit for Illumina sequencer metrics.☆12Aug 16, 2024Updated 2 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 8 months ago
- Locating genetic regions that are "just right"☆17Oct 26, 2016Updated 10 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆10Dec 21, 2022Updated 3 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆214Oct 6, 2026Updated 3 weeks ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆25Updated this week
- A Github action for running a Snakemake workflow☆64Apr 24, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 4 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 11 months ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Oct 1, 2026Updated 3 weeks ago
- ☆11Apr 20, 2018Updated 8 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Which tools to choose based on various performance metrics.☆12Nov 20, 2020Updated 5 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated 2 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Sep 11, 2025Updated last year
- k-mers and the like☆22Oct 18, 2026Updated last week
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago