neilswainston / biochem4jLinks
biochem4j: integrated and extensible biochemical knowledge through graph databases
☆12Updated 7 years ago
Alternatives and similar repositories for biochem4j
Users that are interested in biochem4j are comparing it to the libraries listed below
Sorting:
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- code for Gogleva et al manuscript☆47Updated 3 years ago
- A stitching platform for InXight☆15Updated 10 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆29Updated 11 months ago
- Hetnets in Python (relocated from dhimmel/hetio)☆102Updated 4 months ago
- ☆11Updated 6 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆67Updated 2 months ago
- 🪝 What's the latest version for each database?☆28Updated this week
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆29Updated 8 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 weeks ago
- A python package for pathway visualization☆37Updated 5 years ago
- Python client for the Open Targets REST API at targetvalidation.org☆26Updated 5 months ago
- API for linked biological knowledge☆66Updated 3 years ago
- Connect the dots in networks.☆20Updated 5 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆33Updated 8 years ago
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 10 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆31Updated 7 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆58Updated last week
- Project code for BioHackathon Europe 2023.☆18Updated last year
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 3 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated this week
- Library of Integrated Cellular Signatures L1000☆31Updated 3 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Updated last year
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆28Updated 4 months ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆89Updated last week
- The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and …☆15Updated 10 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated 2 years ago
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago