neilswainston / biochem4jView external linksLinks
biochem4j: integrated and extensible biochemical knowledge through graph databases
☆12Apr 12, 2018Updated 7 years ago
Alternatives and similar repositories for biochem4j
Users that are interested in biochem4j are comparing it to the libraries listed below
Sorting:
- Example usage of the Benchling API: https://docs.benchling.com/☆35Jun 10, 2025Updated 8 months ago
- A stitching platform for InXight☆15Mar 28, 2025Updated 10 months ago
- Contains sample scripts and code to be used with LabKey Server☆11Jan 3, 2025Updated last year
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆33Jul 5, 2024Updated last year
- Quantori Python SDK for PerkinElmer Signals Notebook☆13Feb 23, 2023Updated 2 years ago
- OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientif…☆37Jan 13, 2026Updated last month
- NCATS Biomedical Translator Reasoners Standard API☆40Jan 29, 2026Updated 2 weeks ago
- This library intends to provide simplicity when accessing and parsing data from Power of 10, a UK-based site that provides a comprehensiv…☆12Feb 12, 2024Updated 2 years ago
- ☆22Dec 15, 2025Updated 2 months ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Sep 7, 2022Updated 3 years ago
- Fitting the Hill Equation to Experimental Data☆13Jan 19, 2026Updated 3 weeks ago
- Data visualization workshop☆11May 12, 2020Updated 5 years ago
- ☆10May 22, 2024Updated last year
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Feb 22, 2025Updated 11 months ago
- Code used to generate a dataset quantifying multi-drug use in 80 million patients' prescription drugs claims☆10Sep 26, 2017Updated 8 years ago
- RDKit wrapper☆50Apr 9, 2024Updated last year
- Tutorial Apps for Learning R☆18Dec 28, 2017Updated 8 years ago
- A plugin for exporting RDF from OMERO☆15Dec 3, 2025Updated 2 months ago
- Interactive large image viewer with progressive loading for Wikimedia Commons.☆14Aug 24, 2023Updated 2 years ago
- NLPIR tutorial: pretrain for IR. pre-train on raw textual corpus, fine-tune on MS MARCO Document Ranking☆13Sep 10, 2021Updated 4 years ago
- ☆13Nov 29, 2024Updated last year
- ☆13Updated this week
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- Machine learning on electronic health records☆11Jan 29, 2018Updated 8 years ago
- Repository for DCIS segmentation pipeline☆11Nov 22, 2022Updated 3 years ago
- The new Reactome REST API to access the data☆11Feb 2, 2026Updated 2 weeks ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 7 years ago
- ☆17Jul 29, 2018Updated 7 years ago
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆20Jan 12, 2026Updated last month
- Introduction to RAG (Retrieve Augmented Generation)☆11Feb 1, 2024Updated 2 years ago
- Scripts, data files and ontologies for the FLOPO project☆10Sep 6, 2019Updated 6 years ago
- ☆11May 26, 2022Updated 3 years ago
- Anomaly detection in time-series networks. Spatio-temporal Anomaly Detection☆12Jan 9, 2020Updated 6 years ago
- Draft cell type definitions from data - candidates for inclusion in CL☆12Jul 8, 2025Updated 7 months ago
- Official implementation of DrugGEN in PyTorch☆12Oct 27, 2023Updated 2 years ago
- ☆11Dec 27, 2021Updated 4 years ago
- Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project☆11Jun 6, 2025Updated 8 months ago
- ☆17May 23, 2025Updated 8 months ago
- Memorial acadêmico em formato Latex. Usado em concurso para professor doutor na USP em 2023.☆12Apr 2, 2025Updated 10 months ago