uci-cbcl / EXTREMELinks
An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data
☆32Updated 7 years ago
Alternatives and similar repositories for EXTREME
Users that are interested in EXTREME are comparing it to the libraries listed below
Sorting:
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆21Updated last year
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- The MG-RAST pipeline☆23Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 8 years ago
- Fast fusion detection using kallisto☆80Updated 7 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- A catalogue of docker images for NGS data analysis tools☆9Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- chia pet analysis software☆25Updated 6 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago