Pretrained METL models with minimal dependencies
☆17Sep 18, 2025Updated 5 months ago
Alternatives and similar repositories for metl-pretrained
Users that are interested in metl-pretrained are comparing it to the libraries listed below
Sorting:
- High-throughput framework for running molecular simulations for METL☆23Sep 18, 2025Updated 5 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Feb 3, 2026Updated last month
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- ☆15Apr 3, 2025Updated 11 months ago
- ☆17Dec 23, 2024Updated last year
- Code for the paper "Learning to engineer protein flexibility".☆22Jan 21, 2026Updated last month
- GOProteinGNN: Leveraging Protein Knowledge Graphs for Protein Representation Learning☆13May 13, 2025Updated 9 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- ☆47Sep 16, 2024Updated last year
- ☆37Mar 30, 2025Updated 11 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆71Updated this week
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Contrastive learning harmonizing protein language models and natural language models☆40Jun 12, 2024Updated last year
- ☆40Sep 17, 2024Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- Protein Design by Machine Learning guided Directed Evolution☆48Jan 1, 2026Updated 2 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆31Feb 12, 2026Updated 3 weeks ago
- ☆22Nov 6, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- ☆10Nov 10, 2023Updated 2 years ago
- ☆10Feb 3, 2026Updated last month
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆51Oct 27, 2025Updated 4 months ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆24May 26, 2025Updated 9 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆48Nov 4, 2025Updated 4 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- Protein Origami via Genetic Fusions☆17Sep 19, 2022Updated 3 years ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆13Dec 13, 2024Updated last year
- ☆15Sep 29, 2025Updated 5 months ago
- ☆15Feb 18, 2025Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆84Dec 3, 2025Updated 3 months ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last week
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 5 months ago