gitter-lab / metl-pretrained
Pretrained METL models with minimal dependencies
☆13Updated this week
Alternatives and similar repositories for metl-pretrained:
Users that are interested in metl-pretrained are comparing it to the libraries listed below
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆16Updated last month
- ☆24Updated last month
- Latent-based Directed Evolution guided by Gradient Ascent for Protein Design☆25Updated 9 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆33Updated this week
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆30Updated 2 months ago
- ☆10Updated 8 months ago
- Building more accurate protein structures from backbone torsion angles☆14Updated last year
- Generative diverse protein backbones by protein language model☆29Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆39Updated last month
- ☆32Updated 4 months ago
- ☆36Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆31Updated last month
- GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.☆9Updated last year
- scripts to find PBD structures for cancer driver proteins☆29Updated this week
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 5 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆16Updated last year
- Code for deep learning guided design of dynamic proteins☆17Updated 6 months ago
- Extension of ThermoMPNN for double mutant predictions☆19Updated this week
- Python rich client for visual protein Sequence to Structure Analysis☆12Updated 3 months ago
- ☆13Updated last year
- Differentiable Pairing using Alignment-based Language Models☆17Updated last year
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆11Updated 7 months ago
- ☆14Updated 2 weeks ago
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆13Updated last month
- ☆24Updated this week
- Structure-Informed Protein Language Model☆26Updated 11 months ago
- ☆11Updated last month
- Implementation of Protein Invariant Point Packer (PIPPack)☆31Updated 7 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning☆26Updated 8 months ago