Alternatives and similar repositories for OneKP-gene-family-evo:

Users that are interested in OneKP-gene-family-evo are comparing it to the libraries listed below

• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆18Updated 3 months ago
• fenghen360 / HomBlocks
  HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
  ☆32Updated 7 years ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 3 years ago
• krasileva-group / plant_rgenes
  ☆12Updated 5 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 9 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆43Updated last year
• johnssproul / RepeatProfiler
  ☆24Updated 2 weeks ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆25Updated last month
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆30Updated 4 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆38Updated last week
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆36Updated last week
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated last year
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆46Updated 3 months ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆46Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated 8 months ago
• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆39Updated this week
• byemaxx / callCodeml
  This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)
  ☆16Updated 3 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆36Updated 7 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆53Updated 3 months ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• kentnf / iTAK
  iTAK
  ☆38Updated 8 months ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 5 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆25Updated 6 years ago