IrinaVKuznetsova / CirGOLinks
☆21Updated last year
Alternatives and similar repositories for CirGO
Users that are interested in CirGO are comparing it to the libraries listed below
Sorting:
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- ☆23Updated 9 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- R package for DNA methylation analysis☆19Updated last year
- ☆23Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- DriverPower☆26Updated 8 months ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- ☆20Updated 3 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 2 weeks ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- ☆33Updated 10 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- alternative splicing analysis pipeline☆20Updated 4 years ago
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆38Updated 2 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago