Alternatives and similar repositories for CirGO:

Users that are interested in CirGO are comparing it to the libraries listed below

• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆16Updated 3 years ago
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆37Updated 4 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 5 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 2 weeks ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• smped / ngsReports
  ☆22Updated 2 weeks ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 6 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 2 years ago
• DKFZ-ODCF / ACEseqWorkflow
  Allele-specific copy number estimation with whole genome sequencing
  ☆23Updated last year
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆27Updated 3 years ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆24Updated last month
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 9 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 8 months ago
• NatPRoach / c_elegans_dRNAseq_analysis
  Scripts used in the analysis of C elegans dRNAseq data
  ☆14Updated 11 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆21Updated 4 years ago
• NBISweden / workshop-mlbiostatistics
  ☆15Updated last week
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆17Updated last month
• bjpop / methpat
  A program for summarising CpG methylation patterns
  ☆19Updated 8 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 2 months ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year