IrinaVKuznetsova / CirGOLinks
☆21Updated last year
Alternatives and similar repositories for CirGO
Users that are interested in CirGO are comparing it to the libraries listed below
Sorting:
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- ☆24Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- alternative splicing analysis pipeline☆20Updated 4 years ago
- Evolutionary Transcriptomics with R☆47Updated last month
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆23Updated 5 months ago
- Long read to rMATS☆32Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- ☆23Updated 4 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- ☆20Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- R package for DNA methylation analysis☆19Updated last year
- ☆51Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Updated last year
- Version II of Mandalorion☆32Updated 6 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago