autosome-ru / LegNet
accurate prediction of promoter activity and variant effects from massive parallel reporter assays
☆35Updated 4 months ago
Alternatives and similar repositories for LegNet:
Users that are interested in LegNet are comparing it to the libraries listed below
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆40Updated last month
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- ☆27Updated last month
- ☆71Updated last year
- ☆30Updated 2 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- surrogate quantitative interpretability for deepnets☆21Updated this week
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆45Updated 6 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆38Updated 3 months ago
- Comprehensive Python client for the Uniprot REST API☆46Updated 6 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆37Updated last week
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated 3 weeks ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆67Updated 3 months ago
- Diverse Genomic Embedding Benchmark☆43Updated 5 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆17Updated this week
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆50Updated 2 years ago
- Draw RNA secondary structures in python.☆47Updated 6 months ago
- ☆37Updated last year
- Dataloader for applying sequence models to personalized genomics☆22Updated this week
- python tools for TCR:peptide-MHC modeling and analysis☆71Updated 11 months ago
- Evolutionary velocity with protein language models☆88Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆36Updated 5 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆28Updated 2 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 11 months ago
- ☆18Updated 11 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆50Updated 10 months ago