autosome-ru / LegNetLinks
accurate prediction of promoter activity and variant effects from massive parallel reporter assays
☆43Updated 6 months ago
Alternatives and similar repositories for LegNet
Users that are interested in LegNet are comparing it to the libraries listed below
Sorting:
- ☆42Updated 5 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Updated 4 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- HLA-II ligand predictor.☆46Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- ☆34Updated 11 months ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 3 months ago
- ☆16Updated last month
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆90Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- ☆18Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 9 months ago
- surrogate quantitative interpretability for deepnets☆24Updated 5 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆56Updated 6 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 3 months ago
- ☆38Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 10 months ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- Jax code for functional genomics ML☆14Updated 10 months ago