sjgosai / boda2Links
Computational Optimization of DNA Activity (CODA)
☆59Updated last month
Alternatives and similar repositories for boda2
Users that are interested in boda2 are comparing it to the libraries listed below
Sorting:
- ☆28Updated 4 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 6 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆55Updated last week
- ☆34Updated last month
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 2 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆31Updated 2 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆77Updated 3 weeks ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated 10 months ago
- code to run sei and obtain sei and sequence class predictions☆104Updated 2 years ago
- Knowledge-primed neural networks☆37Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆22Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆151Updated 2 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 2 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆75Updated last month
- ☆74Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆37Updated last month
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆19Updated 11 months ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆36Updated last month
- ☆18Updated last year
- ☆20Updated 3 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆59Updated this week
- Dataloader for applying sequence models to personalized genomics☆26Updated this week
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆119Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 4 months ago
- Predicting gene expression levels from genomic sequences☆53Updated 4 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆40Updated 2 months ago