Biological sequence analysis for the modern age.
☆323Oct 12, 2026Updated this week
Alternatives and similar repositories for tangermeme
Users that are interested in tangermeme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆94Oct 2, 2026Updated last week
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆69Oct 6, 2026Updated last week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Oct 7, 2026Updated last week
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 2 months ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆39Sep 29, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 4 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆116Sep 16, 2026Updated 3 weeks ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆257Jun 9, 2026Updated 4 months ago
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated 2 weeks ago
- AlphaGenome PyTorch port☆162Sep 15, 2026Updated last month
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated 2 weeks ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆22Oct 4, 2026Updated last week
- ☆52Mar 22, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆25Oct 6, 2026Updated last week
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆23Aug 26, 2026Updated last month
- TF MOtif Discovery from Importance SCOres☆193Oct 1, 2026Updated last week
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆87Jun 4, 2026Updated 4 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆46Jul 3, 2025Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆82Oct 2, 2026Updated last week
- ☆52Sep 30, 2026Updated 2 weeks ago
- ☆19Mar 24, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- deep learning-inspired explainable sequence model for transcription initiation☆109Mar 3, 2025Updated last year
- Snakemake workflow for comparing E-G links to experimental data☆25Sep 10, 2026Updated last month
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆41Mar 27, 2025Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- Tool for plotting sequencing data along genomic coordinates.☆356Dec 12, 2025Updated 10 months ago
- Genomic interval operations on Pandas DataFrames☆196Oct 5, 2026Updated last week
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆76Apr 28, 2023Updated 3 years ago
- systematic explanation of attribution-based mechanisms for regulatory genomics☆17Sep 16, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Oct 10, 2024Updated 2 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Aug 10, 2026Updated 2 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 3 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆28Aug 26, 2026Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English anal…☆69Aug 28, 2026Updated last month
- ☆79May 27, 2026Updated 4 months ago