jmschrei / tangermemeLinks
Biological sequence analysis for the modern age.
☆223Updated 3 weeks ago
Alternatives and similar repositories for tangermeme
Users that are interested in tangermeme are comparing it to the libraries listed below
Sorting:
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆160Updated 4 months ago
- RNA-seq prediction with deep convolutional neural networks.☆152Updated 2 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 3 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆263Updated this week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆78Updated last month
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆156Updated 10 months ago
- Single-cell epigenomics analysis tools☆260Updated last week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆231Updated 2 weeks ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆223Updated last month
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated 11 months ago
- code to run sei and obtain sei and sequence class predictions☆105Updated 2 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆231Updated this week
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆255Updated 6 months ago
- predicting expression effects of human genome variants ab initio from sequence☆127Updated 4 months ago
- Python package to perform enrichment analysis from omics data.☆196Updated this week
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 4 months ago
- A tool for detecting somatic variants in single cell data☆205Updated 8 months ago
- muon is a multimodal omics Python framework☆236Updated 3 months ago
- A python extension for quick access to bigWig and bigBed files☆231Updated 4 months ago
- ☆29Updated 4 months ago
- Application for making ENCODE Blacklists☆309Updated 4 years ago
- TF MOtif Discovery from Importance SCOres☆138Updated last year
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆191Updated 2 weeks ago
- TCR and BCR assembly from RNA-seq data☆310Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆193Updated 2 weeks ago
- ☆93Updated 3 weeks ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆40Updated this week
- Perturbation Analysis in the scverse ecosystem.☆178Updated this week