jmschrei / tangermemeView external linksLinks
Biological sequence analysis for the modern age.
☆261Jan 19, 2026Updated 3 weeks ago
Alternatives and similar repositories for tangermeme
Users that are interested in tangermeme are comparing it to the libraries listed below
Sorting:
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆87Sep 24, 2025Updated 4 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆314Jan 29, 2026Updated 2 weeks ago
- This repository hosts a minimal version of a Python API for BPNet.☆55Jan 24, 2026Updated 3 weeks ago
- RNA-seq prediction with deep convolutional neural networks.☆225Aug 28, 2025Updated 5 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆94Nov 13, 2025Updated 3 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆100Jan 31, 2026Updated 2 weeks ago
- A method for analyzing scATAC-seq experiments.☆34Jun 20, 2025Updated 7 months ago
- TF MOtif Discovery from Importance SCOres☆165Dec 14, 2025Updated 2 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆208Feb 2, 2026Updated last week
- Machine learning methods for DNA sequence analysis.☆57Feb 2, 2026Updated last week
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆28Aug 30, 2025Updated 5 months ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆557Jul 7, 2025Updated 7 months ago
- ☆42Updated this week
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆39Mar 27, 2025Updated 10 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101May 29, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆100Mar 3, 2025Updated 11 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Jul 3, 2025Updated 7 months ago
- Jupyter notebook based genomic data visualization toolkit.☆249Dec 4, 2025Updated 2 months ago
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 2 months ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆18Aug 28, 2025Updated 5 months ago
- machine-readable file format for genomic library sequence and structure☆126Updated this week
- ☆14Jan 28, 2026Updated 2 weeks ago
- Genomic interval operations on Pandas DataFrames☆188Feb 2, 2026Updated last week
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- Foundation Models for Genomics & Transcriptomics☆817Jan 15, 2026Updated 3 weeks ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Oct 27, 2025Updated 3 months ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Feb 2, 2026Updated last week
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- Performant Pythonic GenomicRanges☆493Jan 27, 2026Updated 2 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Feb 5, 2026Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Apr 28, 2023Updated 2 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆95Mar 1, 2025Updated 11 months ago