Biological sequence analysis for the modern age.
☆302Jun 25, 2026Updated last week
Alternatives and similar repositories for tangermeme
Users that are interested in tangermeme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 9 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆58Jan 24, 2026Updated 5 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆333Jun 12, 2026Updated 3 weeks ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆107Jun 23, 2026Updated last week
- RNA-seq prediction with deep convolutional neural networks.☆248Aug 28, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated 3 weeks ago
- TF MOtif Discovery from Importance SCOres☆185May 13, 2026Updated last month
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆238Jun 9, 2026Updated 3 weeks ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆568Jun 26, 2026Updated last week
- Machine learning methods for DNA sequence analysis.☆63Jun 10, 2026Updated 3 weeks ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆25Jun 26, 2024Updated 2 years ago
- ☆51Mar 22, 2026Updated 3 months ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆21Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆105Mar 3, 2025Updated last year
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆21Aug 28, 2025Updated 10 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14May 20, 2026Updated last month
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆78Jun 4, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Feb 6, 2023Updated 3 years ago
- Jupyter notebook based genomic data visualization toolkit.☆257Jun 8, 2026Updated 3 weeks ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆75Apr 28, 2023Updated 3 years ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆21Updated this week
- machine-readable file format for genomic library sequence and structure☆130Jun 19, 2026Updated 2 weeks ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆21Jun 8, 2026Updated 3 weeks ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆56Jan 19, 2026Updated 5 months ago
- Foundation Models for Genomics & Transcriptomics☆890Feb 24, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- Tool for plotting sequencing data along genomic coordinates.☆345Dec 12, 2025Updated 6 months ago
- ☆19Mar 24, 2023Updated 3 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆74Updated this week
- Genomic interval operations on Pandas DataFrames☆193Jun 22, 2026Updated last week
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 10 months ago
- Performant Pythonic GenomicRanges☆494Apr 23, 2026Updated 2 months ago