jmschrei / tangermeme
Biological sequence analysis for the modern age.
☆211Updated 2 weeks ago
Alternatives and similar repositories for tangermeme:
Users that are interested in tangermeme are comparing it to the libraries listed below
- RNA-seq prediction with deep convolutional neural networks.☆134Updated last week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆149Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆256Updated this week
- deep learning-inspired explainable sequence model for transcription initiation☆93Updated last month
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆70Updated last month
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆151Updated 8 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆73Updated 8 months ago
- ☆27Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 months ago
- Single-cell epigenomics analysis tools☆250Updated 3 weeks ago
- predicting expression effects of human genome variants ab initio from sequence☆127Updated 2 months ago
- TF MOtif Discovery from Importance SCOres☆135Updated last year
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆219Updated 3 months ago
- code to run sei and obtain sei and sequence class predictions☆99Updated 2 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆227Updated this week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆217Updated 2 weeks ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆280Updated this week
- A python extension for quick access to bigWig and bigBed files☆226Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆117Updated 2 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 2 months ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆166Updated 3 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆181Updated last month
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆184Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆245Updated 4 months ago
- A tool for detecting somatic variants in single cell data☆196Updated 6 months ago
- Genomic Pre-trained Network☆255Updated this week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated 2 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆37Updated 2 weeks ago
- Python package to perform enrichment analysis from omics data.☆184Updated last month
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆118Updated 2 years ago