ML4GLand / SeqData
Annotated sequence data
☆11Updated 2 months ago
Alternatives and similar repositories for SeqData:
Users that are interested in SeqData are comparing it to the libraries listed below
- Genomic sequence preprocessing toolkit☆12Updated last month
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆13Updated 3 weeks ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 2 months ago
- Jax code for functional genomics ML☆12Updated last month
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Dataloader for applying sequence models to personalized genomics☆24Updated this week
- ☆26Updated last year
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- A method for analyzing scATAC-seq experiments.☆30Updated last month
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆14Updated 4 months ago
- A fast dataloader for bigwig files made for machine learning☆27Updated 6 months ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- A python package for chromVAR☆27Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated 3 months ago
- High-definition modeling of chromatin + transcriptomics data☆23Updated this week
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- ☆17Updated 10 months ago
- ☆16Updated 3 months ago
- ☆38Updated 7 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- ☆25Updated 3 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 weeks ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆37Updated this week
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- Summary statistics for repertoires☆16Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last week