Annotated sequence data
☆11Feb 2, 2025Updated last year
Alternatives and similar repositories for SeqData
Users that are interested in SeqData are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomic sequence preprocessing toolkit☆14Jun 30, 2026Updated 3 weeks ago
- ☆13Apr 23, 2025Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Feb 10, 2023Updated 3 years ago
- Dataloader for applying sequence models to personalized genomics☆30Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆20Jun 21, 2019Updated 7 years ago
- The official repository for the ARSENAL model☆16Jul 3, 2026Updated 2 weeks ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆15Feb 4, 2026Updated 5 months ago
- Secretory Pathway Reconstruction for Human, CHO, and Mouse☆12Aug 24, 2021Updated 4 years ago
- A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.☆14May 31, 2021Updated 5 years ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆62Updated this week
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆101Mar 25, 2026Updated 3 months ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- A Python wrapper for the bioRxiv API.☆11Aug 18, 2021Updated 4 years ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆16Apr 29, 2025Updated last year
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated last month
- ☆44May 7, 2026Updated 2 months ago
- ☆51Mar 22, 2026Updated 3 months ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆79Jun 4, 2026Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆21Jul 12, 2026Updated last week
- Container class to represent genomic locations and support genomic analysis☆27Jul 13, 2026Updated last week
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆21Jun 8, 2026Updated last month
- Colo(u)r picker for JupyterLab 4+ and Jupyter Notebook 7+☆16Sep 9, 2024Updated last year
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- A lightweight machine learning framework for Xarray☆22Nov 28, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 4 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 9 years ago
- A fast, precise, pure Python implementation of Fisher's exact test☆12Mar 27, 2017Updated 9 years ago
- Rust crypto trading template. GUI made with egui/eframe. Alpaca Markets websocket for real time prices.☆16Dec 22, 2022Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago