Alternatives and similar repositories for SeqData

Users that are interested in SeqData are comparing it to the libraries listed below

• ML4GLand / SeqPro
  Genomic sequence preprocessing toolkit
  ☆12Updated 2 weeks ago
• ihh / bilby
  Jax code for functional genomics ML
  ☆14Updated 3 months ago
• de-Boer-Lab / hashFrag
  A command-line tool to mitigate homology-based data leakage in sequence-to-expression models
  ☆14Updated 3 months ago
• neurogenomics / EnformerCelltyping
  Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…
  ☆14Updated 7 months ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆29Updated 5 months ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated last month
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆26Updated 2 weeks ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆24Updated 2 years ago
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆25Updated 11 months ago
• songlab-cal / scquint
  ☆17Updated last year
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 2 years ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆24Updated 2 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆19Updated 2 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆31Updated 3 months ago
• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆17Updated last month
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• cbg-ethz / LongSom
  LongSom tool for long-reads
  ☆10Updated last month
• mhorlacher / rbpnet
  ☆18Updated last year
• Mangul-Lab-USC / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆12Updated last year
• COMBINE-lab / pyroe
  ☆16Updated 5 months ago
• liu-bioinfo-lab / EPCOT
  ☆22Updated last year
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 5 months ago
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 7 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated 2 months ago
• regulatory-genomics / precellar
  ☆27Updated this week
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆19Updated 3 years ago