awohns / ldgm
Software for linkage disequilibrium graphical models
☆14Updated 6 months ago
Related projects: ⓘ
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated last year
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Refining the impact of genetic evidence on clinical success☆20Updated 2 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated 6 months ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 2 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆18Updated 3 years ago
- Work for the tree sequence inference paper.☆23Updated 3 years ago
- Code and simulations using biologically annotated neural networks☆20Updated 3 years ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 3 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆13Updated 2 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- GWAS gold standards repository☆29Updated 9 months ago
- ☆11Updated last year
- ☆21Updated 11 months ago
- Modeling and Analysis of (Statistical) Genetics data in python☆16Updated last month
- Mean Alterations Using Discrete Expression☆13Updated 5 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated 7 months ago
- Toy simulations and analyses of heritability and genetic differences☆10Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆27Updated last month
- ☆30Updated 2 years ago
- ☆20Updated 5 months ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- ☆21Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆11Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆13Updated 6 months ago