awohns / ldgmLinks
Software for linkage disequilibrium graphical models
☆16Updated 7 months ago
Alternatives and similar repositories for ldgm
Users that are interested in ldgm are comparing it to the libraries listed below
Sorting:
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Updated 9 months ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- ☆13Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆15Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- ☆14Updated 3 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 6 years ago
- Toy simulations and analyses of heritability and genetic differences☆11Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Updated 4 years ago
- Get SNP proxies from the 1000 Genomes Project.☆30Updated 7 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- ☆29Updated 5 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ☆10Updated 7 years ago
- Scripts used for generating Neale Lab UKB results☆21Updated 3 years ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Updated 3 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago