Software for linkage disequilibrium graphical models
☆17Apr 6, 2025Updated last year
Alternatives and similar repositories for ldgm
Users that are interested in ldgm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and notebooks for models that enable better causal inferences in psychological sciences☆11Dec 24, 2024Updated last year
- A Repository for Polygenic Indexes☆14May 29, 2023Updated 2 years ago
- Latent variable network models☆15Jun 29, 2019Updated 6 years ago
- Software implementing the Latent Causal Variable Model☆65Jun 30, 2020Updated 5 years ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 4 years ago
- Code and simulations using interaction-LD score regression☆13Jul 2, 2024Updated last year
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- A faster and angrier package for EBMF.☆17May 8, 2026Updated 2 weeks ago
- ☆32Jun 20, 2025Updated 11 months ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated 9 months ago
- Python Matrix Factorization Module☆14Mar 13, 2017Updated 9 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Code for the paper "End-to-end training of deep probabilistic CCA on paired biomedical observations".☆27May 18, 2021Updated 5 years ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Nov 28, 2025Updated 5 months ago
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- A Unified Genealogy of Modern and Ancient Humans☆20Dec 10, 2025Updated 5 months ago
- Package for genetic network analysis of GWAS summary statistics☆17Aug 24, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 5 months ago
- personal genome constructor☆11May 29, 2025Updated 11 months ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19May 6, 2026Updated 2 weeks ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆132Dec 9, 2024Updated last year
- R package for Empirical Bayes Factor Analysis.☆53Dec 4, 2024Updated last year
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆36Dec 5, 2025Updated 5 months ago
- Rich text editor for notebooks☆15Mar 13, 2026Updated 2 months ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Jan 20, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- ☆10Jan 30, 2020Updated 6 years ago
- Multi co-moment structural equation models☆13Jan 27, 2025Updated last year
- This has been archived and active development transferred to gitlab.com/genomicsengland/gelreportmodels/GelReportModels☆14May 14, 2021Updated 5 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated last month
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago