awohns / ldgmLinks
Software for linkage disequilibrium graphical models
☆16Updated 7 months ago
Alternatives and similar repositories for ldgm
Users that are interested in ldgm are comparing it to the libraries listed below
Sorting:
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 5 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Updated 8 months ago
- Toy simulations and analyses of heritability and genetic differences☆11Updated last year
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- ☆13Updated 2 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆29Updated 2 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆15Updated 3 years ago
- ☆28Updated 4 months ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Updated last year
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Updated 4 years ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- Mediated Expression Score Regression (MESC)☆26Updated this week
- Statistical properties of polygenic risk scores☆19Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- A pipeline for phasing UK Biobank whole genome sequence data☆19Updated 2 years ago
- Effective Computing—Resources for Computational Biologists☆26Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- GWAS gold standards repository☆39Updated last year
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- ☆32Updated 3 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- Generalized linear Mixed Model Association Tests☆44Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆27Updated 3 months ago