Alternatives and similar repositories for ldgm:

Users that are interested in ldgm are comparing it to the libraries listed below

• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• jeffspence / vilma
  polygenic scores using variational inference on GWAS summary statistics from multiple cohorts
  ☆11Updated 2 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated last month
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 4 months ago
• ChristophH / Inferelator
  The official Inferelator repository maintained by current or former Bonneau lab members
  ☆9Updated 7 years ago
• stephenslab / ldshrink
  ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
  ☆12Updated 3 years ago
• hakyimlab / mixqtl
  Total and allele specific read based cis-QTL, fine-mapping, and prediction
  ☆9Updated 4 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 6 months ago
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆21Updated 3 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆14Updated 2 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆31Updated last year
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 5 years ago
• karltayeb / cafeh
  ☆11Updated 2 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆23Updated last year
• davidaknowles / eagle
  An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…
  ☆21Updated 3 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated 10 months ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆16Updated 2 years ago
• gusevlab / hsq_ancestry_examples
  Toy simulations and analyses of heritability and genetic differences
  ☆10Updated 7 months ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 2 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated last year
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆10Updated last year
• statOmics / stageR
  stageR package
  ☆11Updated last year
• shz9 / magenpy
  Modeling and Analysis of (Statistical) Genetics data in python
  ☆16Updated 3 weeks ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 2 years ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆24Updated 7 months ago
• heyuan7676 / ts_eQTLs
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆21Updated 4 years ago
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆18Updated 2 years ago