Genentech / regLMLinks
Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
☆46Updated last year
Alternatives and similar repositories for regLM
Users that are interested in regLM are comparing it to the libraries listed below
Sorting:
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 6 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- ☆41Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆77Updated last month
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆22Updated last year
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆101Updated last month
- ☆80Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated 2 weeks ago
- For fine-tuning Enformer using paired WGS & gene expression data☆22Updated last month
- ☆18Updated last year
- ☆32Updated 8 months ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆23Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆13Updated last month
- Repository for the paper: "SPACE: STRING proteins as complementary embeddings"☆29Updated 2 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- surrogate quantitative interpretability for deepnets☆24Updated 2 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- ☆86Updated last month
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆125Updated 11 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆96Updated 7 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆72Updated last year