Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
☆50Oct 4, 2024Updated last year
Alternatives and similar repositories for regLM
Users that are interested in regLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotated sequence data☆11Feb 2, 2025Updated last year
- ☆13Apr 23, 2025Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆106Jan 31, 2026Updated 3 months ago
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆20Mar 29, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated last year
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 10 months ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Apr 17, 2026Updated last week
- ☆49Mar 22, 2026Updated last month
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆95Nov 13, 2025Updated 5 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆236Aug 28, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆63Feb 12, 2025Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- ☆34Jan 27, 2025Updated last year
- ☆12Oct 10, 2024Updated last year
- code to run sei and obtain sei and sequence class predictions☆113Dec 20, 2022Updated 3 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆140Feb 25, 2026Updated 2 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- ☆17Feb 15, 2026Updated 2 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆62Apr 1, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Computational analysis of nucleic acids structures using graph neural networks☆15Mar 25, 2024Updated 2 years ago
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆29Jun 23, 2025Updated 10 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆777Apr 22, 2025Updated last year
- Biological sequence analysis for the modern age.☆274Apr 23, 2026Updated last week
- inference of transcription factor activity at the single cell level☆27Dec 16, 2025Updated 4 months ago
- Analyses related to the Borzoi paper.☆26Dec 14, 2025Updated 4 months ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆61Apr 22, 2026Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆144Jun 12, 2024Updated last year
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆478Apr 23, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Oct 8, 2025Updated 6 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆19Nov 18, 2025Updated 5 months ago
- Foundation Models for Genomics & Transcriptomics☆859Feb 24, 2026Updated 2 months ago
- A bot for automatically completing the KAIST safety course☆10Aug 29, 2023Updated 2 years ago
- Biological foundation modeling from molecular to genome scale☆1,505Mar 20, 2026Updated last month
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated 10 months ago