Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
☆52Oct 4, 2024Updated 2 years ago
Alternatives and similar repositories for regLM
Users that are interested in regLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆41Mar 27, 2025Updated last year
- ☆13Apr 23, 2025Updated last year
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆23Aug 1, 2025Updated last year
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated last year
- JanusDNA☆33Mar 19, 2026Updated 6 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆116Sep 16, 2026Updated 3 weeks ago
- Genomic sequence preprocessing toolkit☆14Sep 26, 2026Updated 2 weeks ago
- Computational Optimization of DNA Activity (CODA)☆69Apr 3, 2025Updated last year
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated last week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 4 months ago
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated last week
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Aug 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆28Jun 5, 2025Updated last year
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆810Apr 22, 2025Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 9 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆252Mar 18, 2026Updated 6 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 5 months ago
- Foundation Models for Genomics & Transcriptomics☆923Feb 24, 2026Updated 7 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- code to run sei and obtain sei and sequence class predictions☆118Dec 20, 2022Updated 3 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆365Updated this week
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆232Updated this week
- deep learning-inspired explainable sequence model for transcription initiation☆109Mar 3, 2025Updated last year
- ☆52Mar 22, 2026Updated 6 months ago
- ☆19Mar 31, 2026Updated 6 months ago
- ☆25Oct 2, 2026Updated last week
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆517Jan 1, 2026Updated 9 months ago
- ☆18May 20, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆490Updated this week
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆25Jun 8, 2026Updated 4 months ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated 2 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆157Oct 2, 2026Updated last week
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆33Sep 1, 2026Updated last month