Alternatives and similar repositories for regLM:

Users that are interested in regLM are comparing it to the libraries listed below

• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆17Updated 6 months ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆28Updated last week
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆51Updated last week
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆28Updated this week
• kundajelab / DART-Eval
  ☆23Updated 3 weeks ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆34Updated last month
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆22Updated this week
• ni-lab / personalized-expression-benchmark
  Evaluating genomic sequence models for explaining personalized expression variation
  ☆19Updated last year
• liu-bioinfo-lab / EPCOT
  ☆18Updated last year
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆40Updated this week
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆34Updated last year
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆25Updated 9 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆34Updated this week
• mhorlacher / rbpnet
  ☆17Updated 9 months ago
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated last week
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆32Updated 2 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆17Updated this week
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆26Updated 5 months ago
• mostafavilabuw / EnformerAssessment
  ☆16Updated 4 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆113Updated last month
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆16Updated 7 months ago
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆11Updated last week
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆21Updated 10 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆48Updated 2 years ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆21Updated 5 months ago
• calico / baskerville
  Machine learning methods for DNA sequence analysis.
  ☆35Updated this week
• theislab / prophet
  ☆27Updated 3 weeks ago
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆38Updated 3 years ago
• altoslabs / perturbench
  ☆21Updated last week