Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
☆51Oct 4, 2024Updated last year
Alternatives and similar repositories for regLM
Users that are interested in regLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- ☆13Apr 23, 2025Updated 11 months ago
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆22Aug 1, 2025Updated 8 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆104Jan 31, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 2 months ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 3 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Mar 29, 2026Updated last week
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated last year
- Machine learning methods for DNA sequence analysis.☆61Feb 27, 2026Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 10 months ago
- ☆49Mar 22, 2026Updated 2 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆97Nov 13, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆234Aug 28, 2025Updated 7 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆230Mar 18, 2026Updated 3 weeks ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆63Feb 12, 2025Updated last year
- ☆34Jan 27, 2025Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- ☆12Oct 10, 2024Updated last year
- code to run sei and obtain sei and sequence class predictions☆113Dec 20, 2022Updated 3 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆132Feb 25, 2026Updated last month
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- ☆17Feb 15, 2026Updated last month
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆60Apr 1, 2026Updated last week
- Computational analysis of nucleic acids structures using graph neural networks☆15Mar 25, 2024Updated 2 years ago
- inference of transcription factor activity at the single cell level☆24Dec 16, 2025Updated 3 months ago
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆29Jun 23, 2025Updated 9 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆774Apr 22, 2025Updated 11 months ago
- Analyses related to the Borzoi paper.☆26Dec 14, 2025Updated 3 months ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆59Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Repository for mRNA Paper and CodonBERT publication.☆143Jun 12, 2024Updated last year
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆472Mar 25, 2026Updated 2 weeks ago
- ☆25Oct 8, 2025Updated 6 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆19Nov 18, 2025Updated 4 months ago
- Foundation Models for Genomics & Transcriptomics☆848Feb 24, 2026Updated last month
- A bot for automatically completing the KAIST safety course☆10Aug 29, 2023Updated 2 years ago