A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations
☆63Sep 14, 2026Updated this week
Alternatives and similar repositories for GenomeKit
Users that are interested in GenomeKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 11 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Collection of mRNA benchmarks☆53Sep 5, 2026Updated 2 weeks ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆131Dec 10, 2025Updated 9 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Updated this week
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- ☆17May 22, 2025Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆36Dec 17, 2021Updated 4 years ago
- Machine learning methods for DNA sequence analysis.☆66Updated this week
- Nextflow workshop materials November 2025☆19Aug 15, 2026Updated last month
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆23Aug 26, 2026Updated 3 weeks ago
- Analyses related to the Borzoi paper.☆32Dec 14, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jan 29, 2025Updated last year
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- CompBioBench: A benchmark of 100 diverse, verifiable questions for agents for computational biology (scripts for running agents)☆52Apr 6, 2026Updated 5 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆15Feb 4, 2026Updated 7 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆84Jun 4, 2026Updated 3 months ago
- ☆18Oct 21, 2024Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆264Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- GB.ModelGenerator is a software stack that enables researchers to adapt pretrained models and generate finetuned models for downstream ta…☆125Aug 19, 2026Updated last month
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 7 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆113Updated this week
- ☆17Aug 17, 2025Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 3 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- ☆10Apr 8, 2026Updated 5 months ago
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆28Oct 6, 2023Updated 2 years ago
- Biological sequence analysis for the modern age.☆311Updated this week
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆67Jan 12, 2026Updated 8 months ago
- ☆50May 8, 2026Updated 4 months ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆17Apr 29, 2025Updated last year
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jul 9, 2026Updated 2 months ago