A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations
☆61Apr 22, 2026Updated last week
Alternatives and similar repositories for GenomeKit
Users that are interested in GenomeKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of mRNA benchmarks☆49Mar 25, 2026Updated last month
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 10 months ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆110Dec 10, 2025Updated 4 months ago
- ☆16May 22, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Apr 17, 2026Updated last week
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 4 months ago
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆323Apr 14, 2026Updated 2 weeks ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- Nextflow workshop materials November 2025☆18Mar 14, 2026Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- RNA-seq prediction with deep convolutional neural networks.☆236Aug 28, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Feb 15, 2026Updated 2 months ago
- Dataloader for applying sequence models to personalized genomics☆30Updated this week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Oct 4, 2024Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆65Mar 20, 2026Updated last month
- RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion☆22Aug 13, 2024Updated last year
- Biological sequence analysis for the modern age.☆274Apr 23, 2026Updated last week
- My lovely settings.☆22Feb 25, 2026Updated 2 months ago
- Analyses related to the Borzoi paper.☆26Dec 14, 2025Updated 4 months ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆23Oct 3, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆18Jun 19, 2025Updated 10 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆106Jan 31, 2026Updated 3 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- ☆10Apr 8, 2026Updated 3 weeks ago
- ☆22Mar 20, 2025Updated last year
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆21Dec 2, 2025Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 7 years ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆158Sep 12, 2025Updated 7 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆56Jan 24, 2026Updated 3 months ago
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Apr 12, 2026Updated 2 weeks ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Mar 6, 2025Updated last year
- Dictionary of English words tagged with their natural gender.☆13Sep 7, 2021Updated 4 years ago
- ☆19Mar 21, 2024Updated 2 years ago