SystemsGenetics / GEMmakerLinks
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
☆36Updated last year
Alternatives and similar repositories for GEMmaker
Users that are interested in GEMmaker are comparing it to the libraries listed below
Sorting:
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 7 months ago
- Mapped QC analysis program☆43Updated 7 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 3 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆78Updated 3 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 10 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Version II of Mandalorion☆32Updated 7 years ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Updated 7 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Flexible Bayesian inference of mutational signatures☆39Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- BigWig and BAM utilities☆102Updated last year
- ☆23Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- ☆23Updated last month
- Genomic data interpretation and visualization Workshop☆21Updated 2 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 7 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 2 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago