calico / borzoi

Related projects ⓘ

Alternatives and complementary repositories for borzoi

• calico / baskerville
  Machine learning methods for DNA sequence analysis.
  ☆32Updated 2 weeks ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆22Updated 7 months ago
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆191Updated last week
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆31Updated 2 weeks ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆90Updated 2 weeks ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆123Updated 2 months ago
• kundajelab / DART-Eval
  ☆16Updated 2 weeks ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆58Updated 4 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆39Updated 2 months ago
• ni-lab / personalized-expression-benchmark
  Evaluating genomic sequence models for explaining personalized expression variation
  ☆16Updated 11 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆92Updated last year
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆54Updated last year
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆19Updated last month
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆66Updated 4 months ago
• mcvickerlab / GenVarLoader
  Pipeline for efficient genomic data processing.
  ☆20Updated 2 months ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆142Updated 3 months ago
• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆17Updated 4 months ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆113Updated last year
• ntranoslab / esm-variants
  ☆66Updated last year
• aertslab / CREsted
  ☆27Updated this week
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆96Updated 9 months ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆32Updated 3 months ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆65Updated this week
• Illumina / PrimateAI-3D
  ☆61Updated 4 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆191Updated last month
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆29Updated 3 weeks ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆62Updated this week
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆17Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆109Updated 2 months ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆37Updated last month