RNA-seq prediction with deep convolutional neural networks.
☆261Aug 28, 2025Updated last year
Alternatives and similar repositories for borzoi
Users that are interested in borzoi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 2 months ago
- Machine learning methods for DNA sequence analysis.☆65Jul 20, 2026Updated last month
- Analyses related to the Borzoi paper.☆32Dec 14, 2025Updated 8 months ago
- Biological sequence analysis for the modern age.☆309Updated this week
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆574Jun 26, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Foundation Models for Genomics & Transcriptomics☆915Feb 24, 2026Updated 6 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆107Mar 3, 2025Updated last year
- ☆100Apr 3, 2026Updated 4 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆68Aug 10, 2026Updated 3 weeks ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Jun 12, 2026Updated 2 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆474Jan 15, 2026Updated 7 months ago
- AlphaGenome PyTorch port☆159Aug 25, 2026Updated last week
- Computational Optimization of DNA Activity (CODA)☆69Apr 3, 2025Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆84Jun 4, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆249Jun 9, 2026Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆117Dec 20, 2022Updated 3 years ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated last month
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated last year
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆61Jul 17, 2026Updated last month
- ☆25Aug 20, 2024Updated 2 years ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆100Mar 25, 2026Updated 5 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- ☆19Oct 21, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.☆1,986Updated this week
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆488Updated this week
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆354Updated this week
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 3 months ago
- ☆50May 7, 2026Updated 3 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- ☆29Nov 7, 2023Updated 2 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆36Jun 3, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆103Mar 1, 2025Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆26Jun 26, 2024Updated 2 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 10 months ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆22Aug 26, 2026Updated last week
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆112Updated this week
- TF MOtif Discovery from Importance SCOres☆188Aug 10, 2026Updated 3 weeks ago