calico / borzoi
RNA-seq prediction with deep convolutional neural networks.
☆121Updated 2 months ago
Alternatives and similar repositories for borzoi:
Users that are interested in borzoi are comparing it to the libraries listed below
- deep learning-inspired explainable sequence model for transcription initiation☆93Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆55Updated last month
- Biological sequence analysis for the modern age.☆207Updated 2 months ago
- ☆26Updated 3 weeks ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆69Updated 7 months ago
- code to run sei and obtain sei and sequence class predictions☆97Updated 2 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆140Updated last week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆36Updated last month
- Machine learning methods for DNA sequence analysis.☆37Updated last week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆245Updated this week
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆150Updated 6 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆115Updated 2 years ago
- PyTorch implementation of Basenji2.☆15Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆67Updated last week
- ☆27Updated last month
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆57Updated last week
- ☆64Updated 7 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆66Updated 8 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆19Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆35Updated 3 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆217Updated 2 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆99Updated last month
- Genomic Pre-trained Network☆238Updated this week
- ☆72Updated last year
- Dataloader for applying sequence models to personalized genomics☆22Updated this week
- Normalization of RNA-seq gene expression☆83Updated 3 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆166Updated 11 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆82Updated this week
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆112Updated last week