calico / borzoiLinks
RNA-seq prediction with deep convolutional neural networks.
☆197Updated 3 weeks ago
Alternatives and similar repositories for borzoi
Users that are interested in borzoi are comparing it to the libraries listed below
Sorting:
- Biological sequence analysis for the modern age.☆249Updated this week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆270Updated last week
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 6 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Genomic Pre-trained Network☆279Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆73Updated last week
- Computational Optimization of DNA Activity (CODA)☆61Updated 5 months ago
- ☆32Updated 7 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆164Updated last year
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆92Updated last month
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆178Updated last week
- ☆41Updated last month
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆19Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 10 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆84Updated 3 weeks ago
- Benchmarks for classification of genomic sequences☆157Updated last month
- PyTorch implementation of Basenji2.☆16Updated 4 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆283Updated 3 months ago
- Machine learning methods for DNA sequence analysis.☆54Updated 3 weeks ago
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆28Updated 2 months ago
- TF MOtif Discovery from Importance SCOres☆147Updated last year
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆89Updated last month
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆37Updated 6 months ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 7 months ago
- ☆22Updated 3 months ago
- ☆137Updated last year
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆92Updated 6 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆228Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆124Updated 10 months ago