RNA-seq prediction with deep convolutional neural networks.
☆246Aug 28, 2025Updated 10 months ago
Alternatives and similar repositories for borzoi
Users that are interested in borzoi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated 3 weeks ago
- Machine learning methods for DNA sequence analysis.☆63Jun 10, 2026Updated 3 weeks ago
- deep learning-inspired explainable sequence model for transcription initiation☆105Mar 3, 2025Updated last year
- Biological sequence analysis for the modern age.☆299Jun 25, 2026Updated last week
- Analyses related to the Borzoi paper.☆29Dec 14, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆567Jun 26, 2026Updated last week
- ☆51Mar 22, 2026Updated 3 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 10 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14May 20, 2026Updated last month
- Sequential regulatory activity predictions with deep convolutional neural networks.☆472Jan 15, 2026Updated 5 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆333Jun 12, 2026Updated 3 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆77Jun 4, 2026Updated 3 weeks ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆25Jun 26, 2024Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆115Dec 20, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Foundation Models for Genomics & Transcriptomics☆887Feb 24, 2026Updated 4 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆102Mar 1, 2025Updated last year
- Genomic Pre-trained Network☆346Jun 5, 2026Updated 3 weeks ago
- ☆25Aug 20, 2024Updated last year
- ☆99Apr 3, 2026Updated 3 months ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆21Jun 26, 2026Updated last week
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆107Jun 23, 2026Updated last week
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- ☆17May 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 11 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆55Jan 19, 2026Updated 5 months ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆485Jun 18, 2026Updated 2 weeks ago
- TF MOtif Discovery from Importance SCOres☆185May 13, 2026Updated last month
- This repository hosts a minimal version of a Python API for BPNet.☆58Jan 24, 2026Updated 5 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆101Mar 25, 2026Updated 3 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆89Jun 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 9 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Genomic sequence preprocessing toolkit☆14Jun 26, 2026Updated last week
- ☆28Nov 7, 2023Updated 2 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆238Jun 9, 2026Updated 3 weeks ago
- ☆19Oct 21, 2024Updated last year