xiongxslab / TranslatomerLinks
☆24Updated 3 months ago
Alternatives and similar repositories for Translatomer
Users that are interested in Translatomer are comparing it to the libraries listed below
Sorting:
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- ☆18Updated last year
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- ☆25Updated last year
- ☆26Updated 8 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- ☆36Updated 3 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- ☆18Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 8 months ago
- Analyses related to the Borzoi paper.☆24Updated last week
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆49Updated last month
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆29Updated last month
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆19Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated 2 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Updated last year
- ☆25Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- ☆83Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- ☆26Updated 7 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated last month
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆10Updated last year
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago