xiongxslab / Translatomer
☆20Updated 2 months ago
Alternatives and similar repositories for Translatomer:
Users that are interested in Translatomer are comparing it to the libraries listed below
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- ☆21Updated 8 months ago
- ☆18Updated last year
- ☆34Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Updated last month
- ☆26Updated 3 weeks ago
- CLUMPS adapted to post-translational modifications.☆9Updated last year
- ☆42Updated last year
- ☆17Updated 6 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆41Updated 5 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 3 weeks ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆56Updated last month
- Molecular interactions inference from single-cell multi-omics data☆24Updated 3 weeks ago
- ☆38Updated 2 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆35Updated this week
- ☆13Updated 3 months ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆21Updated last year
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆48Updated 2 weeks ago
- ☆27Updated 3 months ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Updated 7 months ago
- ☆10Updated 4 months ago
- ☆34Updated 2 months ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆11Updated 2 years ago