CaoTianze / pandasgwasLinks
pandasGWAS: a Python package for easy retrieval of GWAS Catalog data
☆17Updated last year
Alternatives and similar repositories for pandasgwas
Users that are interested in pandasgwas are comparing it to the libraries listed below
Sorting:
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- GWAS gold standards repository☆38Updated last year
- TF analysis from epigenetic and Hi-C data☆18Updated 6 months ago
- ☆37Updated 7 months ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆13Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Signed LD profile regression code☆18Updated 2 months ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Explore and download data from the recount3 project☆36Updated last month
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A python package for chromVAR☆31Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- binned motif enrichment analysis and visualisation☆42Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- ☆83Updated 3 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 5 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆15Updated 4 months ago