☆34Jan 27, 2025Updated last year
Alternatives and similar repositories for random-promoter-dream-challenge-2022
Users that are interested in random-promoter-dream-challenge-2022 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆20Mar 29, 2026Updated last month
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- ☆50Mar 22, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆65May 8, 2026Updated last week
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- GPro: a toolbox for Generative approaches in promoter design☆27Mar 8, 2024Updated 2 years ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆16Mar 15, 2026Updated 2 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated 10 months ago
- ☆13Jan 23, 2025Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆53Jan 19, 2026Updated 4 months ago
- ☆11Feb 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆323Apr 14, 2026Updated last month
- ☆25Aug 20, 2024Updated last year
- Dataloader for applying sequence models to personalized genomics☆30May 12, 2026Updated last week
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆23Updated this week
- For fine-tuning Enformer using paired WGS & gene expression data☆31Aug 27, 2025Updated 8 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆25Jun 26, 2024Updated last year
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆20Aug 28, 2025Updated 8 months ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19May 6, 2026Updated last week
- Signed LD profile regression code☆19Aug 1, 2025Updated 9 months ago
- A method to predict DNA shape features considering farther flanking region.☆39Sep 25, 2024Updated last year
- Identifying transcription factor binding sites from neural network contribution scores☆18Nov 8, 2025Updated 6 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆51Oct 4, 2024Updated last year
- surrogate quantitative interpretability for deepnets☆24Aug 11, 2025Updated 9 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆224May 13, 2026Updated last week
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- ☆19Oct 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of command-line tools I wrote to make various repetitive tasks more convenient☆16Updated this week
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Apr 1, 2025Updated last year
- Biological sequence analysis for the modern age.☆273Apr 23, 2026Updated 3 weeks ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 5 months ago
- Benchmarks for classification of genomic sequences☆174Aug 14, 2025Updated 9 months ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆480May 12, 2026Updated last week
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago