de-Boer-Lab / random-promoter-dream-challenge-2022Links
☆31Updated 5 months ago
Alternatives and similar repositories for random-promoter-dream-challenge-2022
Users that are interested in random-promoter-dream-challenge-2022 are comparing it to the libraries listed below
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆67Updated last week
- deep learning-inspired explainable sequence model for transcription initiation☆95Updated 4 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆80Updated 2 weeks ago
- code to run sei and obtain sei and sequence class predictions☆105Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 3 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 7 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 3 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆47Updated last week
- ☆35Updated 2 months ago
- ☆62Updated 3 weeks ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated this week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆168Updated 5 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆82Updated 2 weeks ago
- Dataloader for applying sequence models to personalized genomics☆26Updated this week
- RNA-seq prediction with deep convolutional neural networks.☆176Updated last month
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆40Updated this week
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 5 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 7 months ago
- ☆66Updated 4 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆86Updated 9 months ago
- ☆23Updated 10 months ago
- PyTorch implementation of Basenji2.☆16Updated 2 months ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- ☆74Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆159Updated 11 months ago
- Predictor of TCR-epitope interactions☆28Updated 5 months ago