de-Boer-Lab / random-promoter-dream-challenge-2022Links
☆34Updated last year
Alternatives and similar repositories for random-promoter-dream-challenge-2022
Users that are interested in random-promoter-dream-challenge-2022 are comparing it to the libraries listed below
Sorting:
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 11 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆87Updated 4 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆92Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 10 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 2 weeks ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- ☆42Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- ☆87Updated 2 months ago
- Biological sequence analysis for the modern age.☆261Updated 2 weeks ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- For fine-tuning Enformer using paired WGS & gene expression data☆26Updated 5 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆54Updated last week
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- A tool for visualising kmers in 2D space.☆12Updated 11 months ago
- Machine learning methods for DNA sequence analysis.☆57Updated this week
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- ☆25Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 10 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Updated 3 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆207Updated 4 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆95Updated 11 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 7 months ago
- ☆25Updated 4 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year