Alternatives and similar repositories for popEVE

Users that are interested in popEVE are comparing it to the libraries listed below

• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• JudeWells / chainsaw
  ☆39Updated 8 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆24Updated 3 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆34Updated 2 months ago
• lehner-lab / domainome
  ☆13Updated 5 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆14Updated 4 months ago
• TobiasHeOl / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆17Updated 3 months ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆29Updated 2 months ago
• tymor22 / tm-vec
  ☆68Updated 8 months ago
• csi-greifflab / developability_profiling
  ☆21Updated 5 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆47Updated last month
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆41Updated last month
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 11 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆21Updated 2 weeks ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆33Updated last month
• Doudna-lab / GARNET_DL
  ☆37Updated 4 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆56Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated 2 weeks ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆40Updated last month