debbiemarkslab / popEVEView external linksLinks
☆48Sep 4, 2025Updated 5 months ago
Alternatives and similar repositories for popEVE
Users that are interested in popEVE are comparing it to the libraries listed below
Sorting:
- ☆16Dec 10, 2024Updated last year
- Library for indexing VCF files for random access searches by rsID☆17Feb 2, 2026Updated last week
- A deep learning framework for deubiquitnase-substrate interaction identification☆11Jul 31, 2025Updated 6 months ago
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Jan 26, 2026Updated 2 weeks ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- [NeurIPS 2025] Beyond Masked and Unmasked: Discrete Diffusion Models via Partial Masking☆22Oct 22, 2025Updated 3 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆14Jun 7, 2023Updated 2 years ago
- Repository for code to produce phased 1000 Genomes Project haplotypes called against the CHM13v2 T2T reference genome.☆15Jan 31, 2026Updated last week
- Accessing AlphaMissense Data Resources in R☆13Nov 26, 2025Updated 2 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 2 months ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Feb 2, 2026Updated last week
- ☆18Nov 7, 2024Updated last year
- MaveDB API☆16Feb 6, 2026Updated last week
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆35Feb 17, 2022Updated 3 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Structure-aware PRotein ligand INTeraction (SPRINT) is a ultrafast deep learning framework for drug-target interaction prediction.☆14Jan 30, 2026Updated 2 weeks ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 5 months ago
- Scripts used for generating Neale Lab UKB results☆21Oct 11, 2022Updated 3 years ago
- ☆19Apr 15, 2024Updated last year
- ☆23Jan 9, 2026Updated last month
- Snakemake workflow for comparing E-G links to experimental data☆23Jan 22, 2026Updated 3 weeks ago
- Simulate patients with rare genetic conditions☆24Jul 28, 2023Updated 2 years ago
- A structure checker in python☆24Nov 25, 2024Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Nov 4, 2024Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated last week
- Targeted genotyper for complex polymorphic genes☆36Updated this week
- Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted bind…☆68Jan 15, 2026Updated 3 weeks ago
- ☆26May 19, 2024Updated last year
- Source code accompanying the 'MF-PCBA: Multi-fidelity high-throughput screening benchmarks for drug discovery and machine learning' paper☆31Jul 29, 2025Updated 6 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated last month
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Oct 12, 2018Updated 7 years ago
- ☆10Aug 19, 2024Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33May 16, 2025Updated 8 months ago
- ☆76Oct 27, 2021Updated 4 years ago