kundajelab / ENCODE_downloader
Downloader for ENCODE
☆32Updated 4 years ago
Alternatives and similar repositories for ENCODE_downloader:
Users that are interested in ENCODE_downloader are comparing it to the libraries listed below
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 8 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- Lightweight converter between hic and cool contact matrices.☆71Updated 9 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Python biomart API☆65Updated last year
- Tissue-specific variant effect predictions on splicing☆42Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆108Updated 5 months ago
- A modular Hi-C mapping pipeline☆94Updated 5 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated this week
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- ☆47Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- IDR☆31Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Extract data quickly from Juicebox via straw☆68Updated last month
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- Clustering motif models to remove redundancy☆40Updated 2 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆73Updated 2 weeks ago
- FRASER - Find RAre Splicing Events in RNA-seq☆44Updated 2 months ago
- ☆38Updated 7 months ago
- Tools for working with BUS files☆98Updated last week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago