For fine-tuning Enformer using paired WGS & gene expression data
☆32Aug 27, 2025Updated last year
Alternatives and similar repositories for enformer_fine_tuning
Users that are interested in enformer_fine_tuning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆20Mar 15, 2026Updated 7 months ago
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 5 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆15May 1, 2026Updated 6 months ago
- ☆25Aug 20, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Feb 6, 2023Updated 3 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆88Jun 4, 2026Updated 5 months ago
- AlphaGenome PyTorch port☆164Sep 15, 2026Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆269Sep 30, 2026Updated last month
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- SNp Exploration and Analysis using EPigenomics data☆12Oct 15, 2026Updated 3 weeks ago
- ☆14Jan 23, 2025Updated last year
- ☆38Jan 27, 2025Updated last year
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆23Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English anal…☆72Oct 15, 2026Updated 3 weeks ago
- Analyses related to the Borzoi paper.☆33Oct 1, 2026Updated last month
- ☆53Mar 22, 2026Updated 7 months ago
- ☆12Sep 8, 2023Updated 3 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 3 months ago
- Downloader for ENCODE☆32Oct 5, 2020Updated 6 years ago
- StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning☆13Updated this week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆367Oct 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 4 months ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆39Sep 29, 2026Updated last month
- Biological sequence analysis for the modern age.☆332Oct 20, 2026Updated 2 weeks ago
- ☆18Oct 21, 2024Updated 2 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆13Dec 22, 2025Updated 10 months ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆35May 3, 2026Updated 6 months ago
- Signed LD profile regression code☆20Aug 1, 2025Updated last year
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- FlashRNA - An Efficient Model for Regulatory Genomics☆19Oct 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆46Jul 3, 2025Updated last year
- Machine learning methods for DNA sequence analysis.☆68Sep 30, 2026Updated last month
- ☆26Aug 18, 2026Updated 2 months ago
- Blog page for the Genomics x AI community☆16Updated this week
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- ☆25Oct 2, 2026Updated last month
- Large language model Mistral for DNA☆25Sep 12, 2025Updated last year