For fine-tuning Enformer using paired WGS & gene expression data
☆32Aug 27, 2025Updated 10 months ago
Alternatives and similar repositories for enformer_fine_tuning
Users that are interested in enformer_fine_tuning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆25Aug 20, 2024Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆78Jun 4, 2026Updated last month
- [NPJ AI] A foundation model for individual genome modelling☆26May 9, 2026Updated last month
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆21Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Jan 23, 2025Updated last year
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆17Mar 15, 2026Updated 3 months ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 4 months ago
- Snakemake workflow for comparing E-G links to experimental data☆24May 27, 2026Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆248Aug 28, 2025Updated 10 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆56Jan 19, 2026Updated 5 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14May 20, 2026Updated last month
- Downloader for ENCODE☆32Oct 5, 2020Updated 5 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆333Jun 12, 2026Updated 3 weeks ago
- ☆51Mar 22, 2026Updated 3 months ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- ☆11Feb 6, 2023Updated 3 years ago
- ☆34Jan 27, 2025Updated last year
- ☆27Dec 10, 2025Updated 6 months ago