gagneurlab / MMSplice_MTSplice
Tissue-specific variant effect predictions on splicing
☆40Updated last year
Alternatives and similar repositories for MMSplice_MTSplice:
Users that are interested in MMSplice_MTSplice are comparing it to the libraries listed below
- ☆33Updated 4 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆75Updated last month
- Tools for making plots of genomic datasets in a genome-browser-like format☆31Updated last month
- FRASER - Find RAre Splicing Events in RNA-seq☆40Updated 2 weeks ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 8 months ago
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆34Updated 8 years ago
- ☆23Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆18Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Downloader for ENCODE☆31Updated 4 years ago
- ☆47Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆41Updated 8 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆65Updated last year
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆81Updated this week
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆58Updated this week