Library for manipulating genomic variants and predicting their effects
☆87Oct 26, 2026Updated this week
Alternatives and similar repositories for varcode
Users that are interested in varcode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆27Updated this week
- commandline manipulation of genomic variants and NGS reads☆20Oct 19, 2026Updated last week
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆410Updated this week
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆68Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Boolean Algebra for Genetic Variants☆14Oct 22, 2026Updated last week
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- ☆13Jan 23, 2020Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- HGVS variant name parsing and generation☆177Jun 14, 2023Updated 3 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- mreps: software for tandem repeat identification in DNA☆16Nov 13, 2019Updated 6 years ago
- Analytics toolkit for Illumina sequencer metrics.☆12Aug 16, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)☆16Sep 23, 2016Updated 10 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Django backend to varapp☆19Feb 9, 2017Updated 9 years ago
- Interactive in-browser track viewer☆282Oct 26, 2021Updated 5 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Python interface to amino acid properties and IEDB☆58Oct 20, 2026Updated last week
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆35Sep 25, 2026Updated last month
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆22Aug 18, 2020Updated 6 years ago
- Report generator for Chanjo output☆10Jun 5, 2024Updated 2 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 6 months ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆12Jan 10, 2017Updated 9 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Oct 2, 2026Updated 3 weeks ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated 2 years ago