Library for manipulating genomic variants and predicting their effects
☆87May 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for varcode
Users that are interested in varcode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆26May 16, 2026Updated 3 weeks ago
- A Boolean Algebra for Genetic Variants☆14Updated this week
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400May 13, 2026Updated 3 weeks ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Jan 23, 2020Updated 6 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- ☆21Dec 26, 2025Updated 5 months ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Django backend to varapp☆20Feb 9, 2017Updated 9 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated 11 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63May 22, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- HGVS variant name parsing and generation☆177Jun 14, 2023Updated 2 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Interactive in-browser track viewer☆281Oct 26, 2021Updated 4 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 6 months ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- cython + htslib == fast VCF and BCF processing☆443May 14, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 9 months ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆16Feb 23, 2026Updated 3 months ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 6 months ago