mskcc / roslin-variant
Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis
☆15Updated 2 months ago
Alternatives and similar repositories for roslin-variant:
Users that are interested in roslin-variant are comparing it to the libraries listed below
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- ☆21Updated this week
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆16Updated 8 months ago
- Add functional variant annotation to MAF file☆11Updated 2 months ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆14Updated 4 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Gene lists related to cancer immunotherapy☆13Updated 4 months ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆28Updated 4 months ago
- ☆10Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Unfazed by genomic variant phasing☆26Updated 8 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 6 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago