joachimwolff / scHiCExplorerLinks
Single-cell Hi-C data analysis toolbox
☆27Updated 4 years ago
Alternatives and similar repositories for scHiCExplorer
Users that are interested in scHiCExplorer are comparing it to the libraries listed below
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆33Updated 6 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 8 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 4 months ago
- A toolkit for analyzing architectural stripes☆20Updated 10 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 6 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 2 months ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Genome-wide contact analysis using sklearn☆69Updated last year
- Architectural stripe detection from 3D genome conformation data☆18Updated last month
- ☆21Updated 5 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 6 months ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆76Updated 9 months ago