joachimwolff / scHiCExplorerLinks
Single-cell Hi-C data analysis toolbox
☆27Updated 4 years ago
Alternatives and similar repositories for scHiCExplorer
Users that are interested in scHiCExplorer are comparing it to the libraries listed below
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 7 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- ☆12Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 7 months ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 2 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 5 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆77Updated 9 months ago
- ☆22Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 months ago
- ☆22Updated 5 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 7 months ago
- ☆34Updated this week
- A toolkit for analyzing architectural stripes☆20Updated 11 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Genome-wide contact analysis using sklearn☆70Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 3 months ago
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Updated 5 years ago
- Docker for 4DN Hi-C processing pipeline☆60Updated 11 months ago