shengxin321 / HumanKidney_eQTL_and_snATAC-seqLinks
codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
☆19Updated 4 years ago
Alternatives and similar repositories for HumanKidney_eQTL_and_snATAC-seq
Users that are interested in HumanKidney_eQTL_and_snATAC-seq are comparing it to the libraries listed below
Sorting:
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆30Updated 3 years ago
- ☆17Updated last year
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 11 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated 2 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- ☆19Updated last year
- ☆34Updated last year
- ☆28Updated 2 weeks ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆48Updated 10 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆9Updated 7 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 7 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- ☆20Updated 4 years ago
- ☆25Updated last year
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 months ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆16Updated 2 years ago
- ☆18Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 9 months ago
- ☆15Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆16Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆56Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago