shengxin321 / HumanKidney_eQTL_and_snATAC-seqLinks
codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
☆19Updated 4 years ago
Alternatives and similar repositories for HumanKidney_eQTL_and_snATAC-seq
Users that are interested in HumanKidney_eQTL_and_snATAC-seq are comparing it to the libraries listed below
Sorting:
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆31Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆78Updated 3 years ago
- ☆28Updated 9 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Repository for Cibersortx☆61Updated 4 years ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆75Updated 2 months ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 11 months ago
- scWGCNA☆61Updated 2 years ago
- ☆27Updated 4 years ago
- ☆32Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ☆49Updated 11 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆55Updated 2 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 4 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆9Updated 7 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- ☆20Updated 4 years ago
- Multiscale embedded gene co-expression network analysis☆54Updated last year
- ☆68Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆35Updated 2 years ago
- Analysis of Paired-Tag datasets☆42Updated last year
- ☆34Updated last year