codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
☆19Nov 30, 2020Updated 5 years ago
Alternatives and similar repositories for HumanKidney_eQTL_and_snATAC-seq
Users that are interested in HumanKidney_eQTL_and_snATAC-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆94Sep 26, 2023Updated 2 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Oct 31, 2022Updated 3 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- This code relates to the project titled "Assessing the causal role of epigenetic clocks in the development of multiple cancers: a Mendeli…☆14Nov 22, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆75Feb 4, 2021Updated 5 years ago
- ☆26Feb 25, 2025Updated last year
- R scripts for NGS data visualization☆13Oct 1, 2025Updated 7 months ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Feb 10, 2026Updated 2 months ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- ☆20Jan 9, 2024Updated 2 years ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Mar 7, 2025Updated last year
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Nov 29, 2019Updated 6 years ago
- This is a ggplot2 geom for plotting and comparing the ROC curves☆10Jul 6, 2016Updated 9 years ago
- Chromatin State Maps in Mouse☆23May 16, 2018Updated 7 years ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 3 years ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆23Apr 16, 2018Updated 8 years ago
- Official repository for Characterization of tumor heterogeneity through segmentation-free representation learning on multiplexed imaging …☆15Sep 28, 2025Updated 7 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆88May 13, 2022Updated 3 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆21Sep 6, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- Partitioning algorithm developed for LAVA☆17May 17, 2024Updated last year
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 6 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 3 months ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- GS3, software for genomic prediction and whole genome Bayesian analysis☆10Dec 18, 2017Updated 8 years ago
- A multi-country analysis of the short-term mortality risks of sulphur dioxide☆12Feb 13, 2025Updated last year
- ☆14Nov 1, 2020Updated 5 years ago
- ☆12Mar 21, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Create Regional Association Plots☆13Sep 7, 2025Updated 8 months ago
- ☆14May 25, 2018Updated 7 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 5 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Jun 22, 2025Updated 10 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- ☆29Jul 25, 2024Updated last year
- ☆37Aug 8, 2025Updated 9 months ago