thanhleviet / ISfinder-sequences
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
☆61Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for ISfinder-sequences
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆84Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆39Updated 3 years ago
- A toolbox for comparative genomics.☆97Updated 3 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆26Updated last year
- Reorients assembled microbial sequences☆98Updated last month
- ☆79Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆45Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- IS mapping software☆51Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆40Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆107Updated last week
- code repo for mobileOG-db☆32Updated 4 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆22Updated this week
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆43Updated 8 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆32Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 5 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- CDCgov/mycosnp-nf☆37Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆72Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆110Updated last year
- ☆47Updated 3 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆71Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆27Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆56Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆173Updated 5 months ago