sustc-xylab / ARGpore2Links
ARGpore2
☆13Updated last year
Alternatives and similar repositories for ARGpore2
Users that are interested in ARGpore2 are comparing it to the libraries listed below
Sorting:
- code repo for mobileOG-db☆40Updated 3 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆47Updated 2 years ago
- ☆20Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- ☆53Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- whole genome MLST analysis☆47Updated 3 months ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- MetaCompare☆19Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last month
- ☆50Updated 4 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 4 years ago
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- ☆24Updated 6 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- ☆13Updated 8 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago