gjmckinney / GTscoreLinks
Pipeline for GTseq genotyping and quality control
☆15Updated 2 years ago
Alternatives and similar repositories for GTscore
Users that are interested in GTscore are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 years ago
- RADseq workflow using STACKS☆59Updated 2 weeks ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- Repository for speciation genomics website☆26Updated last month
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆21Updated 4 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- GONE: Scripts, programs and an example data set☆47Updated 2 months ago
- ☆13Updated 8 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- Presentations from the course☆38Updated 2 years ago
- Infer demographic history with the Moran model☆48Updated 4 months ago
- UCE Bioinformatics Pipeline☆17Updated 2 weeks ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆63Updated 11 months ago
- ☆42Updated 2 years ago
- ☆19Updated 7 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- Topology weighting by iterative sampling of sub-trees☆81Updated 9 months ago
- ☆31Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆49Updated 11 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- ☆10Updated 5 years ago