SAMtoBAM / PhasedDiploidGenomeAssemblyPipelineLinks
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
☆22Updated last month
Alternatives and similar repositories for PhasedDiploidGenomeAssemblyPipeline
Users that are interested in PhasedDiploidGenomeAssemblyPipeline are comparing it to the libraries listed below
Sorting:
- ☆42Updated last year
- ☆30Updated 7 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 8 months ago
- SV calling for diploid assemblies☆28Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆37Updated last year
- ☆24Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- Draw a dot plot from a paf alignment☆33Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Identification of transposable element families from pangenome polymorphisms☆52Updated 2 months ago
- ☆36Updated 2 weeks ago
- Multi-genome synteny block visualization tool☆43Updated 6 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 6 months ago
- ☆21Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated 2 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- ☆36Updated 2 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 3 months ago
- Yet another Hi-C scaffolding tool☆21Updated 9 months ago
- ☆41Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated 11 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago