SAMtoBAM / PhasedDiploidGenomeAssemblyPipelineLinks
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
☆22Updated this week
Alternatives and similar repositories for PhasedDiploidGenomeAssemblyPipeline
Users that are interested in PhasedDiploidGenomeAssemblyPipeline are comparing it to the libraries listed below
Sorting:
- SV calling for diploid assemblies☆27Updated last year
- ☆35Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- ☆30Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Domain based annotation of transposable elements☆19Updated last month
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆35Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- ☆35Updated last week
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Draw a dot plot from a paf alignment☆30Updated 2 months ago
- Diploid genome assembly analysis tools☆14Updated 9 months ago
- ☆27Updated 2 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- SV genotyper for long reads with a variation graph☆12Updated 3 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- ☆16Updated 2 years ago