SAMtoBAM / PhasedDiploidGenomeAssemblyPipeline
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
☆19Updated this week
Alternatives and similar repositories for PhasedDiploidGenomeAssemblyPipeline:
Users that are interested in PhasedDiploidGenomeAssemblyPipeline are comparing it to the libraries listed below
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- ☆16Updated 2 years ago
- ☆21Updated 11 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Genome alignment and synteny plots☆28Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Diploid genome assembly analysis tools☆14Updated 5 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- ☆20Updated 6 months ago
- ☆30Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- ☆27Updated 2 years ago
- FastK based version of Merqury☆22Updated last week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 5 months ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- plot genome alignment synteny☆20Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- ☆19Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆17Updated last year