Alternatives and similar repositories for PhasedDiploidGenomeAssemblyPipeline

Users that are interested in PhasedDiploidGenomeAssemblyPipeline are comparing it to the libraries listed below

• baozg / phased-assembly-check
  ☆31Updated 10 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆30Updated 3 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• c-zhou / polyGembler
  ☆16Updated 3 years ago
• i10labtitech / GINGER
  ☆29Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated last month
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated last month
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated 2 months ago
• maickrau / ribotin
  ☆36Updated 3 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆47Updated 3 weeks ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• mrvollger / NucFreq
  ☆38Updated last month
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆29Updated 7 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆28Updated last month
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆45Updated last week
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆31Updated 4 months ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• Argonum-Clever2 / mike
  ☆32Updated 7 months ago