MatteoSchiavinato / Utilities
General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)
☆11Updated 4 years ago
Alternatives and similar repositories for Utilities:
Users that are interested in Utilities are comparing it to the libraries listed below
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- ☆40Updated last year
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- ☆29Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆31Updated this week
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- ☆28Updated last year
- ☆32Updated 4 years ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆27Updated 3 months ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated 3 weeks ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- Plant genome assembly and annotation pipeline using snakemake☆43Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated last month
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆26Updated 2 years ago
- Multi-genome synteny block visualization tool☆33Updated 3 months ago
- ☆21Updated 5 years ago
- ☆32Updated 5 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago